Results 21 - 40 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5327 | 3' | -60.9 | NC_001798.1 | + | 22964 | 0.66 | 0.705945 |
Target: 5'- gGCGGCCCcggcguccggggagGCCGuCGACGa-GCCUGCCGc -3' miRNA: 3'- -UGCCGGG--------------UGGU-GUUGUgcCGGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 126894 | 0.66 | 0.703026 |
Target: 5'- gACGGCCCuccACCACugcuucacagaccuGGCGCGcGCCgugguguuccugaaCACCAg -3' miRNA: 3'- -UGCCGGG---UGGUG--------------UUGUGC-CGG--------------GUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 102903 | 0.66 | 0.699126 |
Target: 5'- cCGGCCUGCCGCcGCcgcuCGGCCaCAaggcuCCAg -3' miRNA: 3'- uGCCGGGUGGUGuUGu---GCCGG-GU-----GGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 99497 | 0.66 | 0.699126 |
Target: 5'- cGCGaCCuCACCACGAa--GGCCCggGCCAc -3' miRNA: 3'- -UGCcGG-GUGGUGUUgugCCGGG--UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 23595 | 0.66 | 0.699126 |
Target: 5'- cCGaGCCCGCC-CAGgGcCGaGCCCGCCn -3' miRNA: 3'- uGC-CGGGUGGuGUUgU-GC-CGGGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 1700 | 0.66 | 0.699126 |
Target: 5'- cCGGCCCGa-AC-ACGCGGCCggagGCCAg -3' miRNA: 3'- uGCCGGGUggUGuUGUGCCGGg---UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 32027 | 0.66 | 0.699126 |
Target: 5'- uCGGgCgACCGCGGcCACGGgCCGCUc -3' miRNA: 3'- uGCCgGgUGGUGUU-GUGCCgGGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 22361 | 0.66 | 0.699126 |
Target: 5'- -gGGgCCGCgCAUAAUGCGGuUCCACCu -3' miRNA: 3'- ugCCgGGUG-GUGUUGUGCC-GGGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 79702 | 0.66 | 0.69815 |
Target: 5'- uGCGGCCC-CCGCuuccGACGgacguccucgaauCGGCCCcgacggucacgGCCAu -3' miRNA: 3'- -UGCCGGGuGGUG----UUGU-------------GCCGGG-----------UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 94988 | 0.66 | 0.69815 |
Target: 5'- gGCGGCggCCGCCugggccccgcaggGCGGCGCGGgCCUggagGCCGg -3' miRNA: 3'- -UGCCG--GGUGG-------------UGUUGUGCC-GGG----UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 152422 | 0.66 | 0.68934 |
Target: 5'- uGCGGCCCgACCGucACACGgGgCUGCCu -3' miRNA: 3'- -UGCCGGG-UGGUguUGUGC-CgGGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 22319 | 0.66 | 0.68934 |
Target: 5'- aACGGgCCGCCGCcacgGACGCGGaCgCGCgGg -3' miRNA: 3'- -UGCCgGGUGGUG----UUGUGCC-GgGUGgU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 26201 | 0.66 | 0.68934 |
Target: 5'- cCGGgCCGCCGCcucgGGCGCGGgCgaCGCCAu -3' miRNA: 3'- uGCCgGGUGGUG----UUGUGCCgG--GUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 26303 | 0.66 | 0.68934 |
Target: 5'- -gGGCgCGCCGCu--GCGGCCCGuCUAc -3' miRNA: 3'- ugCCGgGUGGUGuugUGCCGGGU-GGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 52600 | 0.66 | 0.68934 |
Target: 5'- gUGGCCCugGCCGCGuuugACggcgggucgACGGCCC-CCGa -3' miRNA: 3'- uGCCGGG--UGGUGU----UG---------UGCCGGGuGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 105079 | 0.66 | 0.68934 |
Target: 5'- gACGaaCCCGCgGCccCGCGGCCCGCg- -3' miRNA: 3'- -UGCc-GGGUGgUGuuGUGCCGGGUGgu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 5331 | 0.66 | 0.68934 |
Target: 5'- --cGCCCccagguggaACCGCAuuauGCGCGGCcCCGCCc -3' miRNA: 3'- ugcCGGG---------UGGUGU----UGUGCCG-GGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 47659 | 0.66 | 0.68934 |
Target: 5'- gACGacuUCCGCCGCGGCGCuGGCCCGa-- -3' miRNA: 3'- -UGCc--GGGUGGUGUUGUG-CCGGGUggu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 51906 | 0.66 | 0.68934 |
Target: 5'- cGCGaGCCuCACgGCGuuGCGGCCCguggggGCCGc -3' miRNA: 3'- -UGC-CGG-GUGgUGUugUGCCGGG------UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 133651 | 0.66 | 0.68934 |
Target: 5'- gAC-GCCCACCGCAucgacCACaGcGCCUGCCGg -3' miRNA: 3'- -UGcCGGGUGGUGUu----GUG-C-CGGGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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