miRNA display CGI


Results 61 - 80 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 5' -55.1 NC_001798.1 + 154055 0.68 0.8618
Target:  5'- gCGCGGCACGGCuggaGCGc----CGGGGCGc -3'
miRNA:   3'- -GUGCUGUGCUG----CGCaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 7991 0.68 0.869314
Target:  5'- gCACG-CGuCGACGUGUUccuacGCGGGGUu -3'
miRNA:   3'- -GUGCuGU-GCUGCGCAAaa---CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 48349 0.68 0.869314
Target:  5'- -uCGACGCGAcCGCGgccgccCGGGGCc -3'
miRNA:   3'- guGCUGUGCU-GCGCaaaac-GCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 1627 0.68 0.883695
Target:  5'- cCGCGGCagaggcgcagcgGCGGCGCGU----CGGGGUAc -3'
miRNA:   3'- -GUGCUG------------UGCUGCGCAaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 58984 0.68 0.883695
Target:  5'- gGCGGCcggGCGaACGCGg---GgGGGGCGc -3'
miRNA:   3'- gUGCUG---UGC-UGCGCaaaaCgCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 24569 0.68 0.883695
Target:  5'- gGCGGC-CGGCGCGcggagGCGGGccGCGu -3'
miRNA:   3'- gUGCUGuGCUGCGCaaaa-CGCCC--CGU- -5'
5327 5' -55.1 NC_001798.1 + 16622 0.68 0.883695
Target:  5'- gACGG-ACGACGCGc----CGGGGCAg -3'
miRNA:   3'- gUGCUgUGCUGCGCaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 97815 0.68 0.876614
Target:  5'- uCGCGGCGCGcGCGCGcUUcUGCGcccugacggcGGGCGc -3'
miRNA:   3'- -GUGCUGUGC-UGCGC-AAaACGC----------CCCGU- -5'
5327 5' -55.1 NC_001798.1 + 54715 0.68 0.876614
Target:  5'- cUACGACGCGGUGCGgaccUG-GGGGCc -3'
miRNA:   3'- -GUGCUGUGCUGCGCaaa-ACgCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 84720 0.69 0.803768
Target:  5'- gCACGcACGCGGuguccUGCGUa-UGUGGGGCGg -3'
miRNA:   3'- -GUGC-UGUGCU-----GCGCAaaACGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 96969 0.69 0.803768
Target:  5'- gCGCuGGCGCGGacCGCGgcgggcgGCGGGGCc -3'
miRNA:   3'- -GUG-CUGUGCU--GCGCaaaa---CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 72574 0.69 0.803768
Target:  5'- gCGCGcGCugGuCGCGUcccucGCGGGGCu -3'
miRNA:   3'- -GUGC-UGugCuGCGCAaaa--CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 91804 0.69 0.803768
Target:  5'- gCGCGGgGCGugGggacCGUgg-GCGGGGCc -3'
miRNA:   3'- -GUGCUgUGCugC----GCAaaaCGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 132693 0.69 0.803768
Target:  5'- -cCGACGCGGCGCaggc-GCGGGGg- -3'
miRNA:   3'- guGCUGUGCUGCGcaaaaCGCCCCgu -5'
5327 5' -55.1 NC_001798.1 + 34587 0.69 0.81259
Target:  5'- aCGCGGCGCGGCGUcucgGUgg-GaCGcGGGCAa -3'
miRNA:   3'- -GUGCUGUGCUGCG----CAaaaC-GC-CCCGU- -5'
5327 5' -55.1 NC_001798.1 + 153001 0.69 0.81259
Target:  5'- -cCGGCGCGGgGCGgucgcCGGGGCGg -3'
miRNA:   3'- guGCUGUGCUgCGCaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 102206 0.69 0.824663
Target:  5'- gCGCGGCGCGccgggagucgaccggGCGCGgcu--CGGGGCGg -3'
miRNA:   3'- -GUGCUGUGC---------------UGCGCaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 3311 0.69 0.838038
Target:  5'- gACGGCAaCGGgGCGgcg-GCGGcGGCGg -3'
miRNA:   3'- gUGCUGU-GCUgCGCaaaaCGCC-CCGU- -5'
5327 5' -55.1 NC_001798.1 + 138755 0.69 0.838038
Target:  5'- gGCGAC-CGugGCcagcUGcCGGGGCAg -3'
miRNA:   3'- gUGCUGuGCugCGcaaaAC-GCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 12023 0.69 0.803768
Target:  5'- aACGcCACGGCGgGgcg-GCGgGGGCAu -3'
miRNA:   3'- gUGCuGUGCUGCgCaaaaCGC-CCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.