Results 101 - 109 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5327 | 5' | -55.1 | NC_001798.1 | + | 77209 | 0.74 | 0.565923 |
Target: 5'- gGCGACGgugGACGCGgccgUGCGGGcGCAu -3' miRNA: 3'- gUGCUGUg--CUGCGCaaa-ACGCCC-CGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 150429 | 0.75 | 0.497726 |
Target: 5'- gGCGGCGCGGgGCGgacuccggacgcGCGGGGCGa -3' miRNA: 3'- gUGCUGUGCUgCGCaaaa--------CGCCCCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 36495 | 0.75 | 0.50449 |
Target: 5'- -cCGGCGCGACGCGggcggccggGCGgGGGCGc -3' miRNA: 3'- guGCUGUGCUGCGCaaaa-----CGC-CCCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 2514 | 0.75 | 0.50643 |
Target: 5'- gGCGGCcgcgGCGGCgGCGUcg-GCGGGGCGg -3' miRNA: 3'- gUGCUG----UGCUG-CGCAaaaCGCCCCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 102557 | 0.75 | 0.50643 |
Target: 5'- aCGCGGucaGCGGCGgGUg--GCGGGGCGc -3' miRNA: 3'- -GUGCUg--UGCUGCgCAaaaCGCCCCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 150575 | 0.76 | 0.440664 |
Target: 5'- cCGCGGgGCGGCGCGgagacgGCGGGGgAg -3' miRNA: 3'- -GUGCUgUGCUGCGCaaaa--CGCCCCgU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 134932 | 0.78 | 0.363756 |
Target: 5'- -cCGAguCGGCGCGUgaccuggUGCGGGGCGc -3' miRNA: 3'- guGCUguGCUGCGCAaa-----ACGCCCCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 153821 | 0.8 | 0.289823 |
Target: 5'- gGCGGCA-GGCGCGgcgUGCGGGGCc -3' miRNA: 3'- gUGCUGUgCUGCGCaaaACGCCCCGu -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 33893 | 1.09 | 0.003962 |
Target: 5'- aCACGACACGACGCGUUUUGCGGGGCAu -3' miRNA: 3'- -GUGCUGUGCUGCGCAAAACGCCCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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