Results 101 - 109 of 109 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 5327 | 5' | -55.1 | NC_001798.1 | + | 149984 | 0.66 | 0.921363 |
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Target: 5'- gCGCGGCGCc-CGCGgacgcCGGGGCGa -3' miRNA: 3'- -GUGCUGUGcuGCGCaaaacGCCCCGU- -5' |
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| 5327 | 5' | -55.1 | NC_001798.1 | + | 154080 | 0.66 | 0.921363 |
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Target: 5'- nGCGGCACGGCuggaGCGc----CGGGGCGc -3' miRNA: 3'- gUGCUGUGCUG----CGCaaaacGCCCCGU- -5' |
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| 5327 | 5' | -55.1 | NC_001798.1 | + | 95662 | 0.66 | 0.921363 |
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Target: 5'- aCGCGGCGucguuCGGCG-GUUUgGCGGcGGCGg -3' miRNA: 3'- -GUGCUGU-----GCUGCgCAAAaCGCC-CCGU- -5' |
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| 5327 | 5' | -55.1 | NC_001798.1 | + | 111496 | 0.66 | 0.923024 |
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Target: 5'- gCACGGCGCGgaccuccucGCGCGUcaaucccgacucggcGUGGGGCu -3' miRNA: 3'- -GUGCUGUGC---------UGCGCAaaa------------CGCCCCGu -5' |
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| 5327 | 5' | -55.1 | NC_001798.1 | + | 50077 | 0.66 | 0.926814 |
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Target: 5'- gACGACgAUGACGCucc-UGCGGaGGCc -3' miRNA: 3'- gUGCUG-UGCUGCGcaaaACGCC-CCGu -5' |
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| 5327 | 5' | -55.1 | NC_001798.1 | + | 53108 | 0.66 | 0.932024 |
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Target: 5'- gGCG-CGCGGCGCGagcucccUGCGGcuGGCGc -3' miRNA: 3'- gUGCuGUGCUGCGCaaa----ACGCC--CCGU- -5' |
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| 5327 | 5' | -55.1 | NC_001798.1 | + | 9664 | 0.66 | 0.932024 |
|
Target: 5'- cCGCG-CGCGgaggGCGCGggaUGgGGGGCu -3' miRNA: 3'- -GUGCuGUGC----UGCGCaaaACgCCCCGu -5' |
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| 5327 | 5' | -55.1 | NC_001798.1 | + | 31145 | 0.66 | 0.932024 |
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Target: 5'- -cCGGCGCgGGgGCGgcggUGCGgGGGCGa -3' miRNA: 3'- guGCUGUG-CUgCGCaaa-ACGC-CCCGU- -5' |
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| 5327 | 5' | -55.1 | NC_001798.1 | + | 14995 | 0.66 | 0.936995 |
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Target: 5'- gGgGGgGCGAgGCGUgUUG-GGGGCGa -3' miRNA: 3'- gUgCUgUGCUgCGCAaAACgCCCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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