miRNA display CGI


Results 61 - 80 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 5' -55.1 NC_001798.1 + 9142 0.67 0.899127
Target:  5'- uGCGGCACGcggGCGCGgcgccgcccgcgccGgGGGGCAg -3'
miRNA:   3'- gUGCUGUGC---UGCGCaaaa----------CgCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 52062 0.67 0.89977
Target:  5'- gCGCGACugucGCGugGCcgcccgcuacGCGGGGCGc -3'
miRNA:   3'- -GUGCUG----UGCugCGcaaaa-----CGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 11337 0.67 0.903582
Target:  5'- gACGACgaACGGCGuCGgggUUUGgGGGGgGu -3'
miRNA:   3'- gUGCUG--UGCUGC-GCa--AAACgCCCCgU- -5'
5327 5' -55.1 NC_001798.1 + 1226 0.67 0.903582
Target:  5'- cCGCGGC-CGACgcccaGCGUaucUGCGgGGGCGg -3'
miRNA:   3'- -GUGCUGuGCUG-----CGCAaa-ACGC-CCCGU- -5'
5327 5' -55.1 NC_001798.1 + 31774 0.67 0.903582
Target:  5'- gCGCGAC-CGACGCGc---GCGGGuCGg -3'
miRNA:   3'- -GUGCUGuGCUGCGCaaaaCGCCCcGU- -5'
5327 5' -55.1 NC_001798.1 + 27044 0.67 0.903582
Target:  5'- gGCGGCACGucuccCGCGccc-GCGGGGgGu -3'
miRNA:   3'- gUGCUGUGCu----GCGCaaaaCGCCCCgU- -5'
5327 5' -55.1 NC_001798.1 + 23205 0.67 0.903582
Target:  5'- gACGAcCGCGACGCGggccGCuGGGUc -3'
miRNA:   3'- gUGCU-GUGCUGCGCaaaaCGcCCCGu -5'
5327 5' -55.1 NC_001798.1 + 54386 0.67 0.903582
Target:  5'- gGgGGcCGCGGCGCGgucgGCGGGaGCu -3'
miRNA:   3'- gUgCU-GUGCUGCGCaaaaCGCCC-CGu -5'
5327 5' -55.1 NC_001798.1 + 16050 0.67 0.903582
Target:  5'- aGCGACGCGugGUagGUcgcUG-GGGGCGg -3'
miRNA:   3'- gUGCUGUGCugCG--CAaa-ACgCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 148391 0.67 0.90914
Target:  5'- gGCGugGCGGgcaggugUGCGg---GCGGGGUg -3'
miRNA:   3'- gUGCugUGCU-------GCGCaaaaCGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 148284 0.67 0.90914
Target:  5'- gGCGugGCGGgcaggugUGCGg---GCGGGGUg -3'
miRNA:   3'- gUGCugUGCU-------GCGCaaaaCGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 150368 0.67 0.909746
Target:  5'- -cCGGCACGGCGgGcg--GCGcGGGCc -3'
miRNA:   3'- guGCUGUGCUGCgCaaaaCGC-CCCGu -5'
5327 5' -55.1 NC_001798.1 + 78386 0.67 0.909746
Target:  5'- aCGCG-CugGuCGCGUgc-GCGGcGGCGu -3'
miRNA:   3'- -GUGCuGugCuGCGCAaaaCGCC-CCGU- -5'
5327 5' -55.1 NC_001798.1 + 34097 0.67 0.909746
Target:  5'- -gUGAC-CGGCGCGUggggGCGguGGGCGu -3'
miRNA:   3'- guGCUGuGCUGCGCAaaa-CGC--CCCGU- -5'
5327 5' -55.1 NC_001798.1 + 28656 0.67 0.909746
Target:  5'- cCGCGACcgguuccgGCGcCGCGUg--GCGGcGGCc -3'
miRNA:   3'- -GUGCUG--------UGCuGCGCAaaaCGCC-CCGu -5'
5327 5' -55.1 NC_001798.1 + 113127 0.67 0.909746
Target:  5'- gACGAgGCcGCGUGUg--GCGGGGa- -3'
miRNA:   3'- gUGCUgUGcUGCGCAaaaCGCCCCgu -5'
5327 5' -55.1 NC_001798.1 + 121534 0.67 0.912146
Target:  5'- aCACGGuCGCGGCGCugcgccuggcGUGGGGCc -3'
miRNA:   3'- -GUGCU-GUGCUGCGcaaaa-----CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 135450 0.67 0.915674
Target:  5'- gGCGGCACcggGGCuGCGUUcUG-GGGGCu -3'
miRNA:   3'- gUGCUGUG---CUG-CGCAAaACgCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 23243 0.67 0.915674
Target:  5'- gACGACGuc-CGCGguccGCGGGGCGu -3'
miRNA:   3'- gUGCUGUgcuGCGCaaaaCGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 56521 0.67 0.915674
Target:  5'- aGCGGauCGugGCGg--UGcCGGGGCGc -3'
miRNA:   3'- gUGCUguGCugCGCaaaAC-GCCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.