Results 101 - 109 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5327 | 5' | -55.1 | NC_001798.1 | + | 2628 | 0.66 | 0.941728 |
Target: 5'- gGCGGCGCccuGGC-CGgg--GCGGGGCu -3' miRNA: 3'- gUGCUGUG---CUGcGCaaaaCGCCCCGu -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 96329 | 0.66 | 0.941728 |
Target: 5'- aCGCGcucCAgGuGCGCGUgcUGCGGcGGCAc -3' miRNA: 3'- -GUGCu--GUgC-UGCGCAaaACGCC-CCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 36396 | 0.66 | 0.942188 |
Target: 5'- gCGCGGCGcCGGgGCcccccugccggGCGGGGCGg -3' miRNA: 3'- -GUGCUGU-GCUgCGcaaaa------CGCCCCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 52513 | 0.66 | 0.945785 |
Target: 5'- gACGACGCGgcggccgcGCGCGccgUGCuggcgacGGGGCu -3' miRNA: 3'- gUGCUGUGC--------UGCGCaaaACG-------CCCCGu -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 142172 | 0.66 | 0.946224 |
Target: 5'- aGgGACGCG-CGCGguucugacGCGGGGUc -3' miRNA: 3'- gUgCUGUGCuGCGCaaaa----CGCCCCGu -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 6056 | 0.66 | 0.946224 |
Target: 5'- --aGACGcCGGCgGCGa---GCGGGGCAc -3' miRNA: 3'- gugCUGU-GCUG-CGCaaaaCGCCCCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 59670 | 0.66 | 0.946224 |
Target: 5'- gGCGACuCGGCucGCGUggggGCGgcGGGCAc -3' miRNA: 3'- gUGCUGuGCUG--CGCAaaa-CGC--CCCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 154396 | 0.66 | 0.946224 |
Target: 5'- gGgGGCGCGAagGCGggcgGCGGcGGCGg -3' miRNA: 3'- gUgCUGUGCUg-CGCaaaaCGCC-CCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 58 | 0.66 | 0.946224 |
Target: 5'- gGgGGCGCGAagGCGggcgGCGGcGGCGg -3' miRNA: 3'- gUgCUGUGCUg-CGCaaaaCGCC-CCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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