miRNA display CGI


Results 81 - 100 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 5' -55.1 NC_001798.1 + 132693 0.69 0.803768
Target:  5'- -cCGACGCGGCGCaggc-GCGGGGg- -3'
miRNA:   3'- guGCUGUGCUGCGcaaaaCGCCCCgu -5'
5327 5' -55.1 NC_001798.1 + 86171 0.7 0.794791
Target:  5'- gCGCGACGCGGCcccGCGUUUUGCGcaGUu -3'
miRNA:   3'- -GUGCUGUGCUG---CGCAAAACGCccCGu -5'
5327 5' -55.1 NC_001798.1 + 3200 0.7 0.794791
Target:  5'- -cCGGC-CGGCGCGgag-GCGGGcGCGg -3'
miRNA:   3'- guGCUGuGCUGCGCaaaaCGCCC-CGU- -5'
5327 5' -55.1 NC_001798.1 + 74038 0.7 0.764168
Target:  5'- gGCGGCGCGcggcggccugcguuGCGUGUUUUcGCGGGuGUAc -3'
miRNA:   3'- gUGCUGUGC--------------UGCGCAAAA-CGCCC-CGU- -5'
5327 5' -55.1 NC_001798.1 + 102753 0.7 0.758454
Target:  5'- gGCGACcuGCGGCGCGggaacgcucgcgGCGGGGgAu -3'
miRNA:   3'- gUGCUG--UGCUGCGCaaaa--------CGCCCCgU- -5'
5327 5' -55.1 NC_001798.1 + 2663 0.7 0.757497
Target:  5'- gCGCGccuccCGCGGCGCGgag-GCGGGcGCGg -3'
miRNA:   3'- -GUGCu----GUGCUGCGCaaaaCGCCC-CGU- -5'
5327 5' -55.1 NC_001798.1 + 93741 0.7 0.747873
Target:  5'- aCACGACGCuGAUGCGgc-UGCGGGcccGCc -3'
miRNA:   3'- -GUGCUGUG-CUGCGCaaaACGCCC---CGu -5'
5327 5' -55.1 NC_001798.1 + 1541 0.71 0.728329
Target:  5'- gCACGGCGCGGCG-GUacucgcGCGGGGaCAu -3'
miRNA:   3'- -GUGCUGUGCUGCgCAaaa---CGCCCC-GU- -5'
5327 5' -55.1 NC_001798.1 + 22331 0.71 0.716438
Target:  5'- cCACgGACGCGgacGCGCGggcgucgggGCGGGGCc -3'
miRNA:   3'- -GUG-CUGUGC---UGCGCaaaa-----CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 117680 0.71 0.708452
Target:  5'- gCGCGGCcgGCGGCGUGUac-GCGGGGg- -3'
miRNA:   3'- -GUGCUG--UGCUGCGCAaaaCGCCCCgu -5'
5327 5' -55.1 NC_001798.1 + 2249 0.71 0.694379
Target:  5'- gGCGGCG-GGCGCGccgccgggggGCGGGGCGg -3'
miRNA:   3'- gUGCUGUgCUGCGCaaaa------CGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 69503 0.72 0.667991
Target:  5'- gGCG-CAgGACGCGccggaGCGGGGCGu -3'
miRNA:   3'- gUGCuGUgCUGCGCaaaa-CGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 36310 0.72 0.637308
Target:  5'- gGCGGCGgGGCGCGg---GcCGGGGCc -3'
miRNA:   3'- gUGCUGUgCUGCGCaaaaC-GCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 153666 0.73 0.606587
Target:  5'- gCGCGGCGCGucCGCGg---GCGGGGaCGc -3'
miRNA:   3'- -GUGCUGUGCu-GCGCaaaaCGCCCC-GU- -5'
5327 5' -55.1 NC_001798.1 + 2957 0.73 0.586188
Target:  5'- gCGCaGGCGgGGCGCGUcggcgugcgGCGGGGCGg -3'
miRNA:   3'- -GUG-CUGUgCUGCGCAaaa------CGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 22725 0.74 0.565923
Target:  5'- gACGACgACGACGCaGggccGCGGGGCc -3'
miRNA:   3'- gUGCUG-UGCUGCG-CaaaaCGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 77209 0.74 0.565923
Target:  5'- gGCGACGgugGACGCGgccgUGCGGGcGCAu -3'
miRNA:   3'- gUGCUGUg--CUGCGCaaa-ACGCCC-CGU- -5'
5327 5' -55.1 NC_001798.1 + 52165 0.74 0.555857
Target:  5'- cCGCGGgAgGcCGCG-UUUGCGGGGCGc -3'
miRNA:   3'- -GUGCUgUgCuGCGCaAAACGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 74487 0.74 0.548841
Target:  5'- aGCGGCGCGugGCcaucacccacccccUGCGGGGCGa -3'
miRNA:   3'- gUGCUGUGCugCGcaaa----------ACGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 19140 0.74 0.545843
Target:  5'- cCACGAagaccaACGACGCGUgg-GUGGGGgAa -3'
miRNA:   3'- -GUGCUg-----UGCUGCGCAaaaCGCCCCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.