miRNA display CGI


Results 61 - 80 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 5' -55.1 NC_001798.1 + 60857 0.67 0.915674
Target:  5'- gGCGACGgGAuCGCGUccuccgaaGgGGGGCGg -3'
miRNA:   3'- gUGCUGUgCU-GCGCAaaa-----CgCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 65747 0.67 0.915674
Target:  5'- -cCGGCAUGAUGCuGgcggUGcCGGGGCu -3'
miRNA:   3'- guGCUGUGCUGCG-Caaa-AC-GCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 69503 0.72 0.667991
Target:  5'- gGCG-CAgGACGCGccggaGCGGGGCGu -3'
miRNA:   3'- gUGCuGUgCUGCGCaaaa-CGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 72574 0.69 0.803768
Target:  5'- gCGCGcGCugGuCGCGUcccucGCGGGGCu -3'
miRNA:   3'- -GUGC-UGugCuGCGCAaaa--CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 74038 0.7 0.764168
Target:  5'- gGCGGCGCGcggcggccugcguuGCGUGUUUUcGCGGGuGUAc -3'
miRNA:   3'- gUGCUGUGC--------------UGCGCAAAA-CGCCC-CGU- -5'
5327 5' -55.1 NC_001798.1 + 74487 0.74 0.548841
Target:  5'- aGCGGCGCGugGCcaucacccacccccUGCGGGGCGa -3'
miRNA:   3'- gUGCUGUGCugCGcaaa----------ACGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 77209 0.74 0.565923
Target:  5'- gGCGACGgugGACGCGgccgUGCGGGcGCAu -3'
miRNA:   3'- gUGCUGUg--CUGCGCaaa-ACGCCC-CGU- -5'
5327 5' -55.1 NC_001798.1 + 78386 0.67 0.909746
Target:  5'- aCGCG-CugGuCGCGUgc-GCGGcGGCGu -3'
miRNA:   3'- -GUGCuGugCuGCGCAaaaCGCC-CCGU- -5'
5327 5' -55.1 NC_001798.1 + 83351 0.67 0.897183
Target:  5'- cCGCGGCGuCGccCGCGaacauaggcUGCGGGGCGa -3'
miRNA:   3'- -GUGCUGU-GCu-GCGCaaa------ACGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 84720 0.69 0.803768
Target:  5'- gCACGcACGCGGuguccUGCGUa-UGUGGGGCGg -3'
miRNA:   3'- -GUGC-UGUGCU-----GCGCAaaACGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 86171 0.7 0.794791
Target:  5'- gCGCGACGCGGCcccGCGUUUUGCGcaGUu -3'
miRNA:   3'- -GUGCUGUGCUG---CGCAAAACGCccCGu -5'
5327 5' -55.1 NC_001798.1 + 87373 0.66 0.936995
Target:  5'- aCACGAUcCuGCGCGgag-GgGGGGCGu -3'
miRNA:   3'- -GUGCUGuGcUGCGCaaaaCgCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 91804 0.69 0.803768
Target:  5'- gCGCGGgGCGugGggacCGUgg-GCGGGGCc -3'
miRNA:   3'- -GUGCUgUGCugC----GCAaaaCGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 93741 0.7 0.747873
Target:  5'- aCACGACGCuGAUGCGgc-UGCGGGcccGCc -3'
miRNA:   3'- -GUGCUGUG-CUGCGCaaaACGCCC---CGu -5'
5327 5' -55.1 NC_001798.1 + 95662 0.66 0.921363
Target:  5'- aCGCGGCGucguuCGGCG-GUUUgGCGGcGGCGg -3'
miRNA:   3'- -GUGCUGU-----GCUGCgCAAAaCGCC-CCGU- -5'
5327 5' -55.1 NC_001798.1 + 96329 0.66 0.941728
Target:  5'- aCGCGcucCAgGuGCGCGUgcUGCGGcGGCAc -3'
miRNA:   3'- -GUGCu--GUgC-UGCGCAaaACGCC-CCGU- -5'
5327 5' -55.1 NC_001798.1 + 96969 0.69 0.803768
Target:  5'- gCGCuGGCGCGGacCGCGgcgggcgGCGGGGCc -3'
miRNA:   3'- -GUG-CUGUGCU--GCGCaaaa---CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 97467 0.68 0.8618
Target:  5'- gCGCGGCugggggccgGCGGCGCGaccgGgGGGGCc -3'
miRNA:   3'- -GUGCUG---------UGCUGCGCaaaaCgCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 97630 0.74 0.525998
Target:  5'- uCGCGACGCGGgccgcCGCGgacgUGCGGGaGCGc -3'
miRNA:   3'- -GUGCUGUGCU-----GCGCaaa-ACGCCC-CGU- -5'
5327 5' -55.1 NC_001798.1 + 97815 0.68 0.876614
Target:  5'- uCGCGGCGCGcGCGCGcUUcUGCGcccugacggcGGGCGc -3'
miRNA:   3'- -GUGCUGUGC-UGCGC-AAaACGC----------CCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.