miRNA display CGI


Results 81 - 100 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 5' -55.1 NC_001798.1 + 102206 0.69 0.824663
Target:  5'- gCGCGGCGCGccgggagucgaccggGCGCGgcu--CGGGGCGg -3'
miRNA:   3'- -GUGCUGUGC---------------UGCGCaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 102557 0.75 0.50643
Target:  5'- aCGCGGucaGCGGCGgGUg--GCGGGGCGc -3'
miRNA:   3'- -GUGCUg--UGCUGCgCAaaaCGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 102753 0.7 0.758454
Target:  5'- gGCGACcuGCGGCGCGggaacgcucgcgGCGGGGgAu -3'
miRNA:   3'- gUGCUG--UGCUGCGCaaaa--------CGCCCCgU- -5'
5327 5' -55.1 NC_001798.1 + 111496 0.66 0.923024
Target:  5'- gCACGGCGCGgaccuccucGCGCGUcaaucccgacucggcGUGGGGCu -3'
miRNA:   3'- -GUGCUGUGC---------UGCGCAaaa------------CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 113127 0.67 0.909746
Target:  5'- gACGAgGCcGCGUGUg--GCGGGGa- -3'
miRNA:   3'- gUGCUgUGcUGCGCAaaaCGCCCCgu -5'
5327 5' -55.1 NC_001798.1 + 117680 0.71 0.708452
Target:  5'- gCGCGGCcgGCGGCGUGUac-GCGGGGg- -3'
miRNA:   3'- -GUGCUG--UGCUGCGCAaaaCGCCCCgu -5'
5327 5' -55.1 NC_001798.1 + 121534 0.67 0.912146
Target:  5'- aCACGGuCGCGGCGCugcgccuggcGUGGGGCc -3'
miRNA:   3'- -GUGCU-GUGCUGCGcaaaa-----CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 125476 0.66 0.936995
Target:  5'- cCACGGuCugGugGCGcUUgggcgucGCGGuGGCAa -3'
miRNA:   3'- -GUGCU-GugCugCGCaAAa------CGCC-CCGU- -5'
5327 5' -55.1 NC_001798.1 + 126100 0.66 0.932024
Target:  5'- cCGCGGCGa-ACGCGUcucUGUGGGGgGa -3'
miRNA:   3'- -GUGCUGUgcUGCGCAaa-ACGCCCCgU- -5'
5327 5' -55.1 NC_001798.1 + 132693 0.69 0.803768
Target:  5'- -cCGACGCGGCGCaggc-GCGGGGg- -3'
miRNA:   3'- guGCUGUGCUGCGcaaaaCGCCCCgu -5'
5327 5' -55.1 NC_001798.1 + 134932 0.78 0.363756
Target:  5'- -cCGAguCGGCGCGUgaccuggUGCGGGGCGc -3'
miRNA:   3'- guGCUguGCUGCGCAaa-----ACGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 135450 0.67 0.915674
Target:  5'- gGCGGCACcggGGCuGCGUUcUG-GGGGCu -3'
miRNA:   3'- gUGCUGUG---CUG-CGCAAaACgCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 135958 0.67 0.888519
Target:  5'- gCugGACGCggagcaauacuggaGACGCGUcgUGCgcguaugucccgGGGGCGg -3'
miRNA:   3'- -GugCUGUG--------------CUGCGCAaaACG------------CCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 138755 0.69 0.838038
Target:  5'- gGCGAC-CGugGCcagcUGcCGGGGCAg -3'
miRNA:   3'- gUGCUGuGCugCGcaaaAC-GCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 139352 0.66 0.921363
Target:  5'- uGCGGCcAUGGCgGCGUccgGCGGGGa- -3'
miRNA:   3'- gUGCUG-UGCUG-CGCAaaaCGCCCCgu -5'
5327 5' -55.1 NC_001798.1 + 142172 0.66 0.946224
Target:  5'- aGgGACGCG-CGCGguucugacGCGGGGUc -3'
miRNA:   3'- gUgCUGUGCuGCGCaaaa----CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 148284 0.67 0.90914
Target:  5'- gGCGugGCGGgcaggugUGCGg---GCGGGGUg -3'
miRNA:   3'- gUGCugUGCU-------GCGCaaaaCGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 148391 0.67 0.90914
Target:  5'- gGCGugGCGGgcaggugUGCGg---GCGGGGUg -3'
miRNA:   3'- gUGCugUGCU-------GCGCaaaaCGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 148438 0.68 0.854079
Target:  5'- --gGGCACGG-GCGUaagUGCGGGuGCAu -3'
miRNA:   3'- gugCUGUGCUgCGCAaa-ACGCCC-CGU- -5'
5327 5' -55.1 NC_001798.1 + 149984 0.66 0.921363
Target:  5'- gCGCGGCGCc-CGCGgacgcCGGGGCGa -3'
miRNA:   3'- -GUGCUGUGcuGCGCaaaacGCCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.