Results 101 - 109 of 109 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5327 | 5' | -55.1 | NC_001798.1 | + | 150368 | 0.67 | 0.909746 |
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Target: 5'- -cCGGCACGGCGgGcg--GCGcGGGCc -3' miRNA: 3'- guGCUGUGCUGCgCaaaaCGC-CCCGu -5' |
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| 5327 | 5' | -55.1 | NC_001798.1 | + | 150429 | 0.75 | 0.497726 |
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Target: 5'- gGCGGCGCGGgGCGgacuccggacgcGCGGGGCGa -3' miRNA: 3'- gUGCUGUGCUgCGCaaaa--------CGCCCCGU- -5' |
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| 5327 | 5' | -55.1 | NC_001798.1 | + | 150575 | 0.76 | 0.440664 |
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Target: 5'- cCGCGGgGCGGCGCGgagacgGCGGGGgAg -3' miRNA: 3'- -GUGCUgUGCUGCGCaaaa--CGCCCCgU- -5' |
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| 5327 | 5' | -55.1 | NC_001798.1 | + | 153001 | 0.69 | 0.81259 |
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Target: 5'- -cCGGCGCGGgGCGgucgcCGGGGCGg -3' miRNA: 3'- guGCUGUGCUgCGCaaaacGCCCCGU- -5' |
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| 5327 | 5' | -55.1 | NC_001798.1 | + | 153666 | 0.73 | 0.606587 |
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Target: 5'- gCGCGGCGCGucCGCGg---GCGGGGaCGc -3' miRNA: 3'- -GUGCUGUGCu-GCGCaaaaCGCCCC-GU- -5' |
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| 5327 | 5' | -55.1 | NC_001798.1 | + | 153821 | 0.8 | 0.289823 |
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Target: 5'- gGCGGCA-GGCGCGgcgUGCGGGGCc -3' miRNA: 3'- gUGCUGUgCUGCGCaaaACGCCCCGu -5' |
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| 5327 | 5' | -55.1 | NC_001798.1 | + | 154055 | 0.68 | 0.8618 |
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Target: 5'- gCGCGGCACGGCuggaGCGc----CGGGGCGc -3' miRNA: 3'- -GUGCUGUGCUG----CGCaaaacGCCCCGU- -5' |
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| 5327 | 5' | -55.1 | NC_001798.1 | + | 154080 | 0.66 | 0.921363 |
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Target: 5'- nGCGGCACGGCuggaGCGc----CGGGGCGc -3' miRNA: 3'- gUGCUGUGCUG----CGCaaaacGCCCCGU- -5' |
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| 5327 | 5' | -55.1 | NC_001798.1 | + | 154396 | 0.66 | 0.946224 |
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Target: 5'- gGgGGCGCGAagGCGggcgGCGGcGGCGg -3' miRNA: 3'- gUgCUGUGCUg-CGCaaaaCGCC-CCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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