Results 101 - 109 of 109 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5327 | 5' | -55.1 | NC_001798.1 | + | 15885 | 0.67 | 0.915674 |
Target: 5'- gCAgGGCGCGucgaaacCGCGg---GCGGGGUg -3' miRNA: 3'- -GUgCUGUGCu------GCGCaaaaCGCCCCGu -5' |
|||||||
5327 | 5' | -55.1 | NC_001798.1 | + | 121534 | 0.67 | 0.912146 |
Target: 5'- aCACGGuCGCGGCGCugcgccuggcGUGGGGCc -3' miRNA: 3'- -GUGCU-GUGCUGCGcaaaa-----CGCCCCGu -5' |
|||||||
5327 | 5' | -55.1 | NC_001798.1 | + | 150368 | 0.67 | 0.909746 |
Target: 5'- -cCGGCACGGCGgGcg--GCGcGGGCc -3' miRNA: 3'- guGCUGUGCUGCgCaaaaCGC-CCCGu -5' |
|||||||
5327 | 5' | -55.1 | NC_001798.1 | + | 78386 | 0.67 | 0.909746 |
Target: 5'- aCGCG-CugGuCGCGUgc-GCGGcGGCGu -3' miRNA: 3'- -GUGCuGugCuGCGCAaaaCGCC-CCGU- -5' |
|||||||
5327 | 5' | -55.1 | NC_001798.1 | + | 34097 | 0.67 | 0.909746 |
Target: 5'- -gUGAC-CGGCGCGUggggGCGguGGGCGu -3' miRNA: 3'- guGCUGuGCUGCGCAaaa-CGC--CCCGU- -5' |
|||||||
5327 | 5' | -55.1 | NC_001798.1 | + | 28656 | 0.67 | 0.909746 |
Target: 5'- cCGCGACcgguuccgGCGcCGCGUg--GCGGcGGCc -3' miRNA: 3'- -GUGCUG--------UGCuGCGCAaaaCGCC-CCGu -5' |
|||||||
5327 | 5' | -55.1 | NC_001798.1 | + | 113127 | 0.67 | 0.909746 |
Target: 5'- gACGAgGCcGCGUGUg--GCGGGGa- -3' miRNA: 3'- gUGCUgUGcUGCGCAaaaCGCCCCgu -5' |
|||||||
5327 | 5' | -55.1 | NC_001798.1 | + | 148391 | 0.67 | 0.90914 |
Target: 5'- gGCGugGCGGgcaggugUGCGg---GCGGGGUg -3' miRNA: 3'- gUGCugUGCU-------GCGCaaaaCGCCCCGu -5' |
|||||||
5327 | 5' | -55.1 | NC_001798.1 | + | 135958 | 0.67 | 0.888519 |
Target: 5'- gCugGACGCggagcaauacuggaGACGCGUcgUGCgcguaugucccgGGGGCGg -3' miRNA: 3'- -GugCUGUG--------------CUGCGCAaaACG------------CCCCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home