miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5328 5' -60 NC_001798.1 + 188 0.76 0.255602
Target:  5'- cCCGCGCCCgcccccGCGCGGc--AGGAcGGGGa -3'
miRNA:   3'- -GGCGCGGG------UGCGCCaucUCCUuCCCC- -5'
5328 5' -60 NC_001798.1 + 702 0.67 0.739106
Target:  5'- gCGCGCCgggGCGCGGcacggcUGGAGcGccGGGGc -3'
miRNA:   3'- gGCGCGGg--UGCGCC------AUCUC-CuuCCCC- -5'
5328 5' -60 NC_001798.1 + 962 0.76 0.279856
Target:  5'- cCCGCGCUCcuuGCGCGGcGGcGGcGGGGGg -3'
miRNA:   3'- -GGCGCGGG---UGCGCCaUCuCCuUCCCC- -5'
5328 5' -60 NC_001798.1 + 1004 0.72 0.454009
Target:  5'- gCGCaGCCguaGCGCcaGGUGGGgcGGAAGGGGg -3'
miRNA:   3'- gGCG-CGGg--UGCG--CCAUCU--CCUUCCCC- -5'
5328 5' -60 NC_001798.1 + 1076 0.72 0.454009
Target:  5'- gCGCGUCC--GCGGgcGGGGAcgcGGGGGc -3'
miRNA:   3'- gGCGCGGGugCGCCauCUCCU---UCCCC- -5'
5328 5' -60 NC_001798.1 + 1261 0.66 0.792341
Target:  5'- aCGCGCggcgagaagcacaCC-UGCGGgcGGGGAgacacGGGGGu -3'
miRNA:   3'- gGCGCG-------------GGuGCGCCauCUCCU-----UCCCC- -5'
5328 5' -60 NC_001798.1 + 1516 0.69 0.62341
Target:  5'- cCCGgGCCCGCgGCGGcGGAGGAc---- -3'
miRNA:   3'- -GGCgCGGGUG-CGCCaUCUCCUucccc -5'
5328 5' -60 NC_001798.1 + 1718 0.67 0.742828
Target:  5'- uCCGgGCCCGCGCGGcggcgcgcgguUGGccggcgccgcccccuGGGgcGGGcGg -3'
miRNA:   3'- -GGCgCGGGUGCGCC-----------AUC---------------UCCuuCCC-C- -5'
5328 5' -60 NC_001798.1 + 2237 0.79 0.179709
Target:  5'- gCGCGCCCcgGCGgGGgcGGAGGGAGGGa -3'
miRNA:   3'- gGCGCGGG--UGCgCCa-UCUCCUUCCCc -5'
5328 5' -60 NC_001798.1 + 2589 0.67 0.757567
Target:  5'- cCCGCaGCCgG-GUGGUccGGGGAaaAGGGGg -3'
miRNA:   3'- -GGCG-CGGgUgCGCCAu-CUCCU--UCCCC- -5'
5328 5' -60 NC_001798.1 + 3845 0.67 0.748383
Target:  5'- gCCGCcCCCGCGcCGGggcgcucuucgGGGGGcGGGcGGg -3'
miRNA:   3'- -GGCGcGGGUGC-GCCa----------UCUCCuUCC-CC- -5'
5328 5' -60 NC_001798.1 + 4173 0.68 0.6625
Target:  5'- cCCGCGgggCgGCGCGG-AGAcGGcGGGGGa -3'
miRNA:   3'- -GGCGCg--GgUGCGCCaUCU-CCuUCCCC- -5'
5328 5' -60 NC_001798.1 + 4569 0.72 0.45313
Target:  5'- gCCGcCGCCCccucCGCGGcgUGGGGGGcggcaccGGGGGu -3'
miRNA:   3'- -GGC-GCGGGu---GCGCC--AUCUCCU-------UCCCC- -5'
5328 5' -60 NC_001798.1 + 4932 0.68 0.652743
Target:  5'- gCCcCGCCCGCagaggaagagGCGGaGGAGGAggAGGcGGa -3'
miRNA:   3'- -GGcGCGGGUG----------CGCCaUCUCCU--UCC-CC- -5'
5328 5' -60 NC_001798.1 + 5584 0.67 0.739106
Target:  5'- -gGCGCCUcgGC-CGGUGGuccGGuGGGGGg -3'
miRNA:   3'- ggCGCGGG--UGcGCCAUCu--CCuUCCCC- -5'
5328 5' -60 NC_001798.1 + 6712 0.73 0.419633
Target:  5'- aCCGCGUggGCGCGGgcGGGGggGuGGu -3'
miRNA:   3'- -GGCGCGggUGCGCCauCUCCuuC-CCc -5'
5328 5' -60 NC_001798.1 + 7145 0.68 0.681939
Target:  5'- uCUGCugaGgCgGCGgGG-AGAGGggGGGGg -3'
miRNA:   3'- -GGCG---CgGgUGCgCCaUCUCCuuCCCC- -5'
5328 5' -60 NC_001798.1 + 7282 0.69 0.614613
Target:  5'- gCCGCGCCgcgugagccgucCGC-CGGgggacccaggcuccgGGGGGggGGGGc -3'
miRNA:   3'- -GGCGCGG------------GUGcGCCa--------------UCUCCuuCCCC- -5'
5328 5' -60 NC_001798.1 + 8660 0.68 0.701229
Target:  5'- uCCGgGgCgAgGCGGgcgGGcgaAGGAAGGGGg -3'
miRNA:   3'- -GGCgCgGgUgCGCCa--UC---UCCUUCCCC- -5'
5328 5' -60 NC_001798.1 + 8736 0.68 0.68097
Target:  5'- gCCGCcaccccccaaacaGCCaagGCGCGGUGGGGGGcguGGuGGu -3'
miRNA:   3'- -GGCG-------------CGGg--UGCGCCAUCUCCUu--CC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.