Results 21 - 40 of 163 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5328 | 5' | -60 | NC_001798.1 | + | 75560 | 0.66 | 0.784477 |
Target: 5'- gUGCGCCCGgcUGCGGgauGAGGuggugcgcAGGGu -3' miRNA: 3'- gGCGCGGGU--GCGCCau-CUCCu-------UCCCc -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 15197 | 0.66 | 0.784477 |
Target: 5'- gCCGCGCCUGCaGUGGUuccGGGAcguGGcGGc -3' miRNA: 3'- -GGCGCGGGUG-CGCCAuc-UCCUu--CC-CC- -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 86629 | 0.66 | 0.783597 |
Target: 5'- gCCGCGCaCgGCcaagacggcgaggGCGGaguuggugugUAGGGGggGGGa -3' miRNA: 3'- -GGCGCG-GgUG-------------CGCC----------AUCUCCuuCCCc -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 138529 | 0.66 | 0.775622 |
Target: 5'- aCGCGCCgCcuguggggGgGCGGUGG-GGccGGGGc -3' miRNA: 3'- gGCGCGG-G--------UgCGCCAUCuCCuuCCCC- -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 52944 | 0.66 | 0.775622 |
Target: 5'- uCCGCGCCgGgCGCcucgGGUuGGGGuaagcucgcggcGGGGGGa -3' miRNA: 3'- -GGCGCGGgU-GCG----CCAuCUCC------------UUCCCC- -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 52284 | 0.66 | 0.775622 |
Target: 5'- cCCGgGUaCGgGUGGgcgGGAGGAGGcGGGu -3' miRNA: 3'- -GGCgCGgGUgCGCCa--UCUCCUUC-CCC- -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 82779 | 0.66 | 0.774729 |
Target: 5'- gCUG-GCCCugGUGGUcGGGGAcgcgcugAGGGc -3' miRNA: 3'- -GGCgCGGGugCGCCAuCUCCU-------UCCCc -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 121609 | 0.66 | 0.766649 |
Target: 5'- cCCGCGCaggggggcCGgGGauggGGGGGAAGGGa -3' miRNA: 3'- -GGCGCGggu-----GCgCCa---UCUCCUUCCCc -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 115313 | 0.66 | 0.765745 |
Target: 5'- uCCGCGUgCGgGgGGgucagGGAcagcgccaucagcGGAGGGGGg -3' miRNA: 3'- -GGCGCGgGUgCgCCa----UCU-------------CCUUCCCC- -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 51339 | 0.66 | 0.764841 |
Target: 5'- cCCG-GCCCaccucgcaccgaGCGCGGUGGucuacguugaucGGcAGGGGg -3' miRNA: 3'- -GGCgCGGG------------UGCGCCAUCu-----------CCuUCCCC- -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 78020 | 0.67 | 0.761212 |
Target: 5'- gCGCGCCCACGCccUGGAGGcGAugcucaacgacgcgcGGGa -3' miRNA: 3'- gGCGCGGGUGCGccAUCUCC-UU---------------CCCc -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 52898 | 0.67 | 0.757567 |
Target: 5'- gCGUGgguCCCG-GCGGcGGcGGAGGGGGg -3' miRNA: 3'- gGCGC---GGGUgCGCCaUCuCCUUCCCC- -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 111583 | 0.67 | 0.757567 |
Target: 5'- cCCGCGCCgC-CGCGGcaaacgccUGGccGGucGGGGa -3' miRNA: 3'- -GGCGCGG-GuGCGCC--------AUCu-CCuuCCCC- -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 2589 | 0.67 | 0.757567 |
Target: 5'- cCCGCaGCCgG-GUGGUccGGGGAaaAGGGGg -3' miRNA: 3'- -GGCG-CGGgUgCGCCAu-CUCCU--UCCCC- -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 15415 | 0.67 | 0.757567 |
Target: 5'- gCCgGCGCCCGCGCGcGcugugcggccaUGGcggcguccggcGGGGAGGGc -3' miRNA: 3'- -GG-CGCGGGUGCGC-C-----------AUC-----------UCCUUCCCc -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 121202 | 0.67 | 0.757567 |
Target: 5'- uCUGCcCCCGgGgaCGGgugGGAGGAAGGaGGa -3' miRNA: 3'- -GGCGcGGGUgC--GCCa--UCUCCUUCC-CC- -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 79915 | 0.67 | 0.754822 |
Target: 5'- aCGCGgCCGaagaagccgagaccUGCGGguccUGGAGGuGGGGGc -3' miRNA: 3'- gGCGCgGGU--------------GCGCC----AUCUCCuUCCCC- -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 21450 | 0.67 | 0.753905 |
Target: 5'- gCGUGCCUGCaGUGGgacucgauggccgGGGGGucGGGGc -3' miRNA: 3'- gGCGCGGGUG-CGCCa------------UCUCCuuCCCC- -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 133855 | 0.67 | 0.752068 |
Target: 5'- -gGCGUCUGCGCuuccgugaacccgggGGUGG-GGAuGGGGg -3' miRNA: 3'- ggCGCGGGUGCG---------------CCAUCuCCUuCCCC- -5' |
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5328 | 5' | -60 | NC_001798.1 | + | 144063 | 0.67 | 0.748383 |
Target: 5'- gCGCcaCCCACGaCGGgcgcAGGGGAccgcaggcauccAGGGGu -3' miRNA: 3'- gGCGc-GGGUGC-GCCa---UCUCCU------------UCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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