miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 3' -60.7 NC_001798.1 + 84410 0.66 0.74858
Target:  5'- cGCGggCG-UGCUGgcaCC-CGCUCCUGGa -3'
miRNA:   3'- aCGCaaGCaACGAC---GGcGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 139641 0.66 0.74858
Target:  5'- gGCGaggccggUGgcGCUGUCGuCGUCCUCGGg -3'
miRNA:   3'- aCGCaa-----GCaaCGACGGC-GCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 118698 0.66 0.74858
Target:  5'- gGCGguggUCGgcgUGCUGCCGgaGgCUgCGGg -3'
miRNA:   3'- aCGCa---AGCa--ACGACGGCg-CgGGgGCC- -5'
5330 3' -60.7 NC_001798.1 + 91408 0.66 0.74858
Target:  5'- aGUucUCGaugGCcGCCaGgGCCCCCGGa -3'
miRNA:   3'- aCGcaAGCaa-CGaCGG-CgCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 70555 0.66 0.74765
Target:  5'- -aCGUUgGUcUGCUccGCCGUGaucgcgcCCCCCGGg -3'
miRNA:   3'- acGCAAgCA-ACGA--CGGCGC-------GGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 102805 0.66 0.74765
Target:  5'- cGcCGUgcCGcUGCUcagcgcgggagggGCCGCGCCCCCc- -3'
miRNA:   3'- aC-GCAa-GCaACGA-------------CGGCGCGGGGGcc -5'
5330 3' -60.7 NC_001798.1 + 48075 0.66 0.739235
Target:  5'- cUGCGUUCGgucagGCUGCuCGUGCgagCGGg -3'
miRNA:   3'- -ACGCAAGCaa---CGACG-GCGCGgggGCC- -5'
5330 3' -60.7 NC_001798.1 + 126683 0.66 0.739235
Target:  5'- cGCGgUCGagagcGCgccgGCCGCGUCCUCGc -3'
miRNA:   3'- aCGCaAGCaa---CGa---CGGCGCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 40791 0.66 0.739235
Target:  5'- -cCGUggGUUGUUaGUCGCGUCCgCCGGc -3'
miRNA:   3'- acGCAagCAACGA-CGGCGCGGG-GGCC- -5'
5330 3' -60.7 NC_001798.1 + 24529 0.66 0.739235
Target:  5'- cGCGUagGggGUUuCCGCGUagCCCGGg -3'
miRNA:   3'- aCGCAagCaaCGAcGGCGCGg-GGGCC- -5'
5330 3' -60.7 NC_001798.1 + 103575 0.66 0.739235
Target:  5'- cGCGUcCGaggcccggGCgGCgGCGCCCCCc- -3'
miRNA:   3'- aCGCAaGCaa------CGaCGgCGCGGGGGcc -5'
5330 3' -60.7 NC_001798.1 + 39232 0.66 0.739235
Target:  5'- -cCGUaCGggGCguacGUCGCGgCCCCGGc -3'
miRNA:   3'- acGCAaGCaaCGa---CGGCGCgGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 142880 0.66 0.729804
Target:  5'- gGCGUUCGUcgcGCUGCCGa-CCCauaCGc -3'
miRNA:   3'- aCGCAAGCAa--CGACGGCgcGGGg--GCc -5'
5330 3' -60.7 NC_001798.1 + 126792 0.66 0.729804
Target:  5'- cGCGcccCGgcGCUccagccguGCCGCGCCCCgGc -3'
miRNA:   3'- aCGCaa-GCaaCGA--------CGGCGCGGGGgCc -5'
5330 3' -60.7 NC_001798.1 + 123183 0.66 0.729804
Target:  5'- aGUcgUCGggGCgcGCCgcGCGCCCCCGc -3'
miRNA:   3'- aCGcaAGCaaCGa-CGG--CGCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 58036 0.66 0.729804
Target:  5'- gGCGgcggUGggGUcggGCCucaucGUGCCCCCGGa -3'
miRNA:   3'- aCGCaa--GCaaCGa--CGG-----CGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 107511 0.66 0.729804
Target:  5'- gGCGUgUCGUUG--GgCG-GCCCCCGGc -3'
miRNA:   3'- aCGCA-AGCAACgaCgGCgCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 26453 0.66 0.720294
Target:  5'- gGCGccUGacGC-GCCGCGCCCCCc- -3'
miRNA:   3'- aCGCaaGCaaCGaCGGCGCGGGGGcc -5'
5330 3' -60.7 NC_001798.1 + 37980 0.66 0.720294
Target:  5'- cGCacgaCGgcGCUGCUGUGCUCCgCGGc -3'
miRNA:   3'- aCGcaa-GCaaCGACGGCGCGGGG-GCC- -5'
5330 3' -60.7 NC_001798.1 + 130616 0.66 0.720294
Target:  5'- aGCGUg----GCgcggGCCGUGCCCCaccuGGg -3'
miRNA:   3'- aCGCAagcaaCGa---CGGCGCGGGGg---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.