miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 3' -60.7 NC_001798.1 + 56165 0.67 0.652217
Target:  5'- cGCGguggCGUcgGCgGCCccgGCGgCCCCGGc -3'
miRNA:   3'- aCGCaa--GCAa-CGaCGG---CGCgGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 22820 0.67 0.652217
Target:  5'- cGCGUcgacgCGUugaUGCUGCgccugcugcgcaCGUGCCCgCGGa -3'
miRNA:   3'- aCGCAa----GCA---ACGACG------------GCGCGGGgGCC- -5'
5330 3' -60.7 NC_001798.1 + 109849 0.67 0.652217
Target:  5'- gGCGUcccugcUCGggUGCUGUgcgguuggggaaCGCGCCCCgaGGa -3'
miRNA:   3'- aCGCA------AGCa-ACGACG------------GCGCGGGGg-CC- -5'
5330 3' -60.7 NC_001798.1 + 67248 0.67 0.642371
Target:  5'- -uCGaUCGgaUGCUGaCCGCGUgCCCCGGc -3'
miRNA:   3'- acGCaAGCa-ACGAC-GGCGCG-GGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 102136 0.67 0.642371
Target:  5'- cGCGUUUGacgGCggGUCGacgGCCCCCGa -3'
miRNA:   3'- aCGCAAGCaa-CGa-CGGCg--CGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 106367 0.67 0.642371
Target:  5'- cGCGgggCG-UGCcGCCGCgaccgcacggGCCCCCGc -3'
miRNA:   3'- aCGCaa-GCaACGaCGGCG----------CGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 19806 0.67 0.668917
Target:  5'- cGCGUgaccuggugCGggGCgccgcggccacccaUGCCGCGUgCCUGGg -3'
miRNA:   3'- aCGCAa--------GCaaCG--------------ACGGCGCGgGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 150643 0.67 0.671857
Target:  5'- gGCGggcUCGgcccuggGCgggcucgGCCGgggcgcCGCCCCCGGg -3'
miRNA:   3'- aCGCa--AGCaa-----CGa------CGGC------GCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 1668 0.67 0.691377
Target:  5'- gGCGgagcggCGggGCggcGCCGgGCCCUCGcGg -3'
miRNA:   3'- aCGCaa----GCaaCGa--CGGCgCGGGGGC-C- -5'
5330 3' -60.7 NC_001798.1 + 2198 0.67 0.691377
Target:  5'- ----cUCGggGCgGCCcCGUCCCCGGg -3'
miRNA:   3'- acgcaAGCaaCGaCGGcGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 67712 0.67 0.691377
Target:  5'- cGCcaUCGUgcgcucGCUcuCCGUGCCCCUGGu -3'
miRNA:   3'- aCGcaAGCAa-----CGAc-GGCGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 48658 0.67 0.681636
Target:  5'- gGCGgUCGcgGCgacccggcGCCGCGaCCgCCGGg -3'
miRNA:   3'- aCGCaAGCaaCGa-------CGGCGC-GGgGGCC- -5'
5330 3' -60.7 NC_001798.1 + 21009 0.67 0.681636
Target:  5'- cGCGcUUCaa-GCUGCgCGCGCCCgCGu -3'
miRNA:   3'- aCGC-AAGcaaCGACG-GCGCGGGgGCc -5'
5330 3' -60.7 NC_001798.1 + 149218 0.67 0.681636
Target:  5'- cGgGUUCGUgguaaugagaUGCcgGCCccGCGCUCCCGu -3'
miRNA:   3'- aCgCAAGCA----------ACGa-CGG--CGCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 81523 0.67 0.681636
Target:  5'- gGCGuUUCGgccuuccGCcgGCCcggGgGCCCCCGGg -3'
miRNA:   3'- aCGC-AAGCaa-----CGa-CGG---CgCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 99606 0.67 0.681636
Target:  5'- aGCcugUCGcccaUGCccGCC-CGCCCCCGGa -3'
miRNA:   3'- aCGca-AGCa---ACGa-CGGcGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 59638 0.67 0.671857
Target:  5'- cUGCGgccCGUgaugGCCGCGCgCCCGa -3'
miRNA:   3'- -ACGCaa-GCAacgaCGGCGCGgGGGCc -5'
5330 3' -60.7 NC_001798.1 + 128584 0.67 0.671857
Target:  5'- cGCGaguacCGccGC-GCCGUGCUCCCGGc -3'
miRNA:   3'- aCGCaa---GCaaCGaCGGCGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 152218 0.67 0.671857
Target:  5'- gGCGUcggCGggGCggggGgCGCgGCCCCCGcGg -3'
miRNA:   3'- aCGCAa--GCaaCGa---CgGCG-CGGGGGC-C- -5'
5330 3' -60.7 NC_001798.1 + 43019 0.68 0.632517
Target:  5'- gGUGgccCGcuugGCccCCGCGCCCCCGGc -3'
miRNA:   3'- aCGCaa-GCaa--CGacGGCGCGGGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.