miRNA display CGI


Results 61 - 80 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 3' -60.7 NC_001798.1 + 54455 0.68 0.602982
Target:  5'- cGCGgcCGgggacgUGCUacaGCCGC-CCCCUGGu -3'
miRNA:   3'- aCGCaaGCa-----ACGA---CGGCGcGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 15967 0.68 0.602982
Target:  5'- aGCGUg---UGCUGCCugagaaaCGCCCCCaGGc -3'
miRNA:   3'- aCGCAagcaACGACGGc------GCGGGGG-CC- -5'
5330 3' -60.7 NC_001798.1 + 45059 0.68 0.593168
Target:  5'- cGcCGUUCcugGCgGgCGCGCCCUCGGc -3'
miRNA:   3'- aC-GCAAGcaaCGaCgGCGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 103134 0.68 0.593168
Target:  5'- cGCGUUCGg-GCUGUCGCGCgUggGGg -3'
miRNA:   3'- aCGCAAGCaaCGACGGCGCGgGggCC- -5'
5330 3' -60.7 NC_001798.1 + 39447 0.68 0.592188
Target:  5'- aGCGcUUCGccGCgcacGCCGgggaccuggugccCGCCCCCGGc -3'
miRNA:   3'- aCGC-AAGCaaCGa---CGGC-------------GCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 49348 0.68 0.612816
Target:  5'- gGCGUUCuccaggGCcGCCGCGgCCgCGGu -3'
miRNA:   3'- aCGCAAGcaa---CGaCGGCGCgGGgGCC- -5'
5330 3' -60.7 NC_001798.1 + 122187 0.68 0.612816
Target:  5'- gGCGgaccUGcUGCggGCCGCgGCCCCCGc -3'
miRNA:   3'- aCGCaa--GCaACGa-CGGCG-CGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 129598 0.68 0.632517
Target:  5'- cGCGgcCGccccucccGCggggGCCGCGCCCCCc- -3'
miRNA:   3'- aCGCaaGCaa------CGa---CGGCGCGGGGGcc -5'
5330 3' -60.7 NC_001798.1 + 43019 0.68 0.632517
Target:  5'- gGUGgccCGcuugGCccCCGCGCCCCCGGc -3'
miRNA:   3'- aCGCaa-GCaa--CGacGGCGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 19469 0.68 0.622663
Target:  5'- cGCGcUgGUgGCgGCCGCcCCCUCGGa -3'
miRNA:   3'- aCGCaAgCAaCGaCGGCGcGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 19284 0.68 0.612816
Target:  5'- cUGCGUUCugGggGCUGUucaaCGUGgaCCCCGGg -3'
miRNA:   3'- -ACGCAAG--CaaCGACG----GCGCg-GGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 25925 0.68 0.612816
Target:  5'- cGCGUUCGaccccGCggaccCCgGCGCCCCCGcGg -3'
miRNA:   3'- aCGCAAGCaa---CGac---GG-CGCGGGGGC-C- -5'
5330 3' -60.7 NC_001798.1 + 47541 0.68 0.612816
Target:  5'- gGCGUUCGUg---GCCcucaUGCCCCCGa -3'
miRNA:   3'- aCGCAAGCAacgaCGGc---GCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 128349 0.69 0.525539
Target:  5'- cGCGggCGcUGCUcgaGCCcgacggcgacGCGCCCCCGc -3'
miRNA:   3'- aCGCaaGCaACGA---CGG----------CGCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 77691 0.69 0.553273
Target:  5'- cGCcUUCGUgguggUGCUgaagacccuguucGCCGaCGCCCCCGa -3'
miRNA:   3'- aCGcAAGCA-----ACGA-------------CGGC-GCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 7471 0.69 0.558101
Target:  5'- cGCGUUcCGUUucuucucccucccggGCcGCCcCGCUCCCGGg -3'
miRNA:   3'- aCGCAA-GCAA---------------CGaCGGcGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 151138 0.69 0.56391
Target:  5'- aGCugcUGUUGCgcGCCGCGCCCgagauCCGGa -3'
miRNA:   3'- aCGcaaGCAACGa-CGGCGCGGG-----GGCC- -5'
5330 3' -60.7 NC_001798.1 + 38510 0.69 0.573626
Target:  5'- cGCGacccggCGcUGCUGCCGC-CCCUCGu -3'
miRNA:   3'- aCGCaa----GCaACGACGGCGcGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 29501 0.69 0.573626
Target:  5'- gGCGUUgCGUUGggGCacgGCGUCCuCCGGc -3'
miRNA:   3'- aCGCAA-GCAACgaCGg--CGCGGG-GGCC- -5'
5330 3' -60.7 NC_001798.1 + 130941 0.69 0.525539
Target:  5'- cGUGgccCGggGCcgGCCcccCGCCCCCGGg -3'
miRNA:   3'- aCGCaa-GCaaCGa-CGGc--GCGGGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.