miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 3' -60.7 NC_001798.1 + 119539 1.09 0.001171
Target:  5'- cUGCGUUCGUUGCUGCCGCGCCCCCGGu -3'
miRNA:   3'- -ACGCAAGCAACGACGGCGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 48393 0.81 0.113617
Target:  5'- cGCuGUUCGcguUUGCUgGCCGUGUCCCCGGa -3'
miRNA:   3'- aCG-CAAGC---AACGA-CGGCGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 16607 0.77 0.19078
Target:  5'- gGCGaa-GcUGCUGCgguCGCGCCCCCGGg -3'
miRNA:   3'- aCGCaagCaACGACG---GCGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 58591 0.77 0.195417
Target:  5'- cGgGUgacUCGccaugGCgGCCGCGCCCCCGGc -3'
miRNA:   3'- aCgCA---AGCaa---CGaCGGCGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 122688 0.77 0.204988
Target:  5'- gGCGUcCGcggGC-GCCGCGCCCCCGu -3'
miRNA:   3'- aCGCAaGCaa-CGaCGGCGCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 56837 0.76 0.220104
Target:  5'- aUGCGagCGUcGCUGCUGCGCCaccagguggaCCCGGc -3'
miRNA:   3'- -ACGCaaGCAaCGACGGCGCGG----------GGGCC- -5'
5330 3' -60.7 NC_001798.1 + 74775 0.76 0.220104
Target:  5'- gGCGccgCGUccGCcGCCGgGCCCCCGGg -3'
miRNA:   3'- aCGCaa-GCAa-CGaCGGCgCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 154573 0.75 0.241728
Target:  5'- cGCGccgCGggGCUGCCuucccgcggGCGCCCCCGc -3'
miRNA:   3'- aCGCaa-GCaaCGACGG---------CGCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 235 0.75 0.241728
Target:  5'- cGCGccgCGggGCUGCCuucccgcggGCGCCCCCGc -3'
miRNA:   3'- aCGCaa-GCaaCGACGG---------CGCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 115262 0.75 0.265092
Target:  5'- cGCGUgccUCGUg---GCCGCggGCCCCCGGa -3'
miRNA:   3'- aCGCA---AGCAacgaCGGCG--CGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 83652 0.73 0.331441
Target:  5'- cGCGgUCGgcGUg--CGCGCCCCCGGg -3'
miRNA:   3'- aCGCaAGCaaCGacgGCGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 4535 0.73 0.353592
Target:  5'- cGgGggUGUUGgUGCCGCGggggaCCCCGGg -3'
miRNA:   3'- aCgCaaGCAACgACGGCGCg----GGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 114920 0.72 0.361205
Target:  5'- gGCGgaUCGUcgGCUccccGCCGCGCUgCCGGg -3'
miRNA:   3'- aCGCa-AGCAa-CGA----CGGCGCGGgGGCC- -5'
5330 3' -60.7 NC_001798.1 + 3163 0.72 0.361205
Target:  5'- gGCGggCGUgggGCUGCCcugGCGCUCggCCGGg -3'
miRNA:   3'- aCGCaaGCAa--CGACGG---CGCGGG--GGCC- -5'
5330 3' -60.7 NC_001798.1 + 114884 0.72 0.391968
Target:  5'- gGCGUcgaggcuUCGggGgUGCCgGCGUCCUCGGg -3'
miRNA:   3'- aCGCA-------AGCaaCgACGG-CGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 149454 0.72 0.391968
Target:  5'- aGCGaUCGacGCcGCCGCGCCCcggcucgCCGGg -3'
miRNA:   3'- aCGCaAGCaaCGaCGGCGCGGG-------GGCC- -5'
5330 3' -60.7 NC_001798.1 + 117606 0.72 0.400948
Target:  5'- gUGUGUgagCGUggccGCUcgcGCCGCGCCgCCUGGc -3'
miRNA:   3'- -ACGCAa--GCAa---CGA---CGGCGCGG-GGGCC- -5'
5330 3' -60.7 NC_001798.1 + 122879 0.71 0.409224
Target:  5'- cGCGgagGggGCggcgGCC-CGCCCCCGGa -3'
miRNA:   3'- aCGCaagCaaCGa---CGGcGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 45880 0.71 0.426092
Target:  5'- gGCGUUCGggUGCgacGCCGCGCUCgUGc -3'
miRNA:   3'- aCGCAAGCa-ACGa--CGGCGCGGGgGCc -5'
5330 3' -60.7 NC_001798.1 + 47228 0.71 0.43468
Target:  5'- cGCGUUCccgaGCUGCUG-GCCCCCa- -3'
miRNA:   3'- aCGCAAGcaa-CGACGGCgCGGGGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.