Results 41 - 60 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5330 | 3' | -60.7 | NC_001798.1 | + | 38510 | 0.69 | 0.573626 |
Target: 5'- cGCGacccggCGcUGCUGCCGC-CCCUCGu -3' miRNA: 3'- aCGCaa----GCaACGACGGCGcGGGGGCc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 142821 | 0.69 | 0.5746 |
Target: 5'- uUGcCGUUCGaacccgcagaagcgGCUGCCGCGCCagaCCCa- -3' miRNA: 3'- -AC-GCAAGCaa------------CGACGGCGCGG---GGGcc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 39447 | 0.68 | 0.592188 |
Target: 5'- aGCGcUUCGccGCgcacGCCGgggaccuggugccCGCCCCCGGc -3' miRNA: 3'- aCGC-AAGCaaCGa---CGGC-------------GCGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 45059 | 0.68 | 0.593168 |
Target: 5'- cGcCGUUCcugGCgGgCGCGCCCUCGGc -3' miRNA: 3'- aC-GCAAGcaaCGaCgGCGCGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 103134 | 0.68 | 0.593168 |
Target: 5'- cGCGUUCGg-GCUGUCGCGCgUggGGg -3' miRNA: 3'- aCGCAAGCaaCGACGGCGCGgGggCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 15967 | 0.68 | 0.602982 |
Target: 5'- aGCGUg---UGCUGCCugagaaaCGCCCCCaGGc -3' miRNA: 3'- aCGCAagcaACGACGGc------GCGGGGG-CC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 54455 | 0.68 | 0.602982 |
Target: 5'- cGCGgcCGgggacgUGCUacaGCCGC-CCCCUGGu -3' miRNA: 3'- aCGCaaGCa-----ACGA---CGGCGcGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 19284 | 0.68 | 0.612816 |
Target: 5'- cUGCGUUCugGggGCUGUucaaCGUGgaCCCCGGg -3' miRNA: 3'- -ACGCAAG--CaaCGACG----GCGCg-GGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 75263 | 0.68 | 0.612816 |
Target: 5'- gGuCGaccCGcaGCUGCUGCGCCgCCGGg -3' miRNA: 3'- aC-GCaa-GCaaCGACGGCGCGGgGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 25925 | 0.68 | 0.612816 |
Target: 5'- cGCGUUCGaccccGCggaccCCgGCGCCCCCGcGg -3' miRNA: 3'- aCGCAAGCaa---CGac---GG-CGCGGGGGC-C- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 122187 | 0.68 | 0.612816 |
Target: 5'- gGCGgaccUGcUGCggGCCGCgGCCCCCGc -3' miRNA: 3'- aCGCaa--GCaACGa-CGGCG-CGGGGGCc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 49348 | 0.68 | 0.612816 |
Target: 5'- gGCGUUCuccaggGCcGCCGCGgCCgCGGu -3' miRNA: 3'- aCGCAAGcaa---CGaCGGCGCgGGgGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 47541 | 0.68 | 0.612816 |
Target: 5'- gGCGUUCGUg---GCCcucaUGCCCCCGa -3' miRNA: 3'- aCGCAAGCAacgaCGGc---GCGGGGGCc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 19469 | 0.68 | 0.622663 |
Target: 5'- cGCGcUgGUgGCgGCCGCcCCCUCGGa -3' miRNA: 3'- aCGCaAgCAaCGaCGGCGcGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 43019 | 0.68 | 0.632517 |
Target: 5'- gGUGgccCGcuugGCccCCGCGCCCCCGGc -3' miRNA: 3'- aCGCaa-GCaa--CGacGGCGCGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 129598 | 0.68 | 0.632517 |
Target: 5'- cGCGgcCGccccucccGCggggGCCGCGCCCCCc- -3' miRNA: 3'- aCGCaaGCaa------CGa---CGGCGCGGGGGcc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 67248 | 0.67 | 0.642371 |
Target: 5'- -uCGaUCGgaUGCUGaCCGCGUgCCCCGGc -3' miRNA: 3'- acGCaAGCa-ACGAC-GGCGCG-GGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 102136 | 0.67 | 0.642371 |
Target: 5'- cGCGUUUGacgGCggGUCGacgGCCCCCGa -3' miRNA: 3'- aCGCAAGCaa-CGa-CGGCg--CGGGGGCc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 106367 | 0.67 | 0.642371 |
Target: 5'- cGCGgggCG-UGCcGCCGCgaccgcacggGCCCCCGc -3' miRNA: 3'- aCGCaa-GCaACGaCGGCG----------CGGGGGCc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 22820 | 0.67 | 0.652217 |
Target: 5'- cGCGUcgacgCGUugaUGCUGCgccugcugcgcaCGUGCCCgCGGa -3' miRNA: 3'- aCGCAa----GCA---ACGACG------------GCGCGGGgGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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