miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 3' -60.7 NC_001798.1 + 20057 0.66 0.717428
Target:  5'- cGCGggUGcUGCUGCCGCGCggcuaCgacuacuucgugagCCCGGc -3'
miRNA:   3'- aCGCaaGCaACGACGGCGCG-----G--------------GGGCC- -5'
5330 3' -60.7 NC_001798.1 + 7724 0.66 0.710715
Target:  5'- gGCGggcCGggGCUugGCCGCcgagguGCgCCCCGGc -3'
miRNA:   3'- aCGCaa-GCaaCGA--CGGCG------CG-GGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 6227 0.66 0.710715
Target:  5'- gGCGUgcaugCGUUGUgauucaaccGCCcuCGCCCCCGc -3'
miRNA:   3'- aCGCAa----GCAACGa--------CGGc-GCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 4372 0.66 0.710715
Target:  5'- gGCGggCGgcGCgggcccgGCCGCGUCCgCGc -3'
miRNA:   3'- aCGCaaGCaaCGa------CGGCGCGGGgGCc -5'
5330 3' -60.7 NC_001798.1 + 830 0.66 0.710715
Target:  5'- cGCG-UCGUcGCUGUCGU-CCgCCUGGg -3'
miRNA:   3'- aCGCaAGCAaCGACGGCGcGG-GGGCC- -5'
5330 3' -60.7 NC_001798.1 + 129733 0.66 0.710715
Target:  5'- cGCGgcCGacucGCUcGCCGCGCCCgCCu- -3'
miRNA:   3'- aCGCaaGCaa--CGA-CGGCGCGGG-GGcc -5'
5330 3' -60.7 NC_001798.1 + 127707 0.66 0.710715
Target:  5'- gGCGggCGgcacGuCUcCCGCGCCCgCGGg -3'
miRNA:   3'- aCGCaaGCaa--C-GAcGGCGCGGGgGCC- -5'
5330 3' -60.7 NC_001798.1 + 55859 0.66 0.709753
Target:  5'- gUGCaGUUUGa-GCaGCCGCGCCgcugcccgacgcgCCCGGa -3'
miRNA:   3'- -ACG-CAAGCaaCGaCGGCGCGG-------------GGGCC- -5'
5330 3' -60.7 NC_001798.1 + 123139 0.66 0.704937
Target:  5'- cGCGUcCGgaguccgccccgcGCcGCCGcCGCCCCCGu -3'
miRNA:   3'- aCGCAaGCaa-----------CGaCGGC-GCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 154661 0.66 0.701073
Target:  5'- gGCGggCGgcaggGCaGCCccgcGCGCCCCCu- -3'
miRNA:   3'- aCGCaaGCaa---CGaCGG----CGCGGGGGcc -5'
5330 3' -60.7 NC_001798.1 + 151016 0.66 0.701073
Target:  5'- cGCGUgaucagggCGUacUGCUgcGCCGCGUCgCCCa- -3'
miRNA:   3'- aCGCAa-------GCA--ACGA--CGGCGCGG-GGGcc -5'
5330 3' -60.7 NC_001798.1 + 130066 0.66 0.701073
Target:  5'- gGCuGgcCGgagcccgGCccGCCGCGCCCCCGc -3'
miRNA:   3'- aCG-CaaGCaa-----CGa-CGGCGCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 127464 0.66 0.701073
Target:  5'- cGCGggggggaGggGCUGCCGCGagCUCGGc -3'
miRNA:   3'- aCGCaag----CaaCGACGGCGCggGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 52427 0.66 0.701073
Target:  5'- cGUGUcggCGgcGCUucGCCGa-CCCCCGGa -3'
miRNA:   3'- aCGCAa--GCaaCGA--CGGCgcGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 323 0.66 0.701073
Target:  5'- gGCGggCGgcaggGCaGCCccgcGCGCCCCCu- -3'
miRNA:   3'- aCGCaaGCaa---CGaCGG----CGCGGGGGcc -5'
5330 3' -60.7 NC_001798.1 + 1668 0.67 0.691377
Target:  5'- gGCGgagcggCGggGCggcGCCGgGCCCUCGcGg -3'
miRNA:   3'- aCGCaa----GCaaCGa--CGGCgCGGGGGC-C- -5'
5330 3' -60.7 NC_001798.1 + 2198 0.67 0.691377
Target:  5'- ----cUCGggGCgGCCcCGUCCCCGGg -3'
miRNA:   3'- acgcaAGCaaCGaCGGcGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 67712 0.67 0.691377
Target:  5'- cGCcaUCGUgcgcucGCUcuCCGUGCCCCUGGu -3'
miRNA:   3'- aCGcaAGCAa-----CGAc-GGCGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 21009 0.67 0.681636
Target:  5'- cGCGcUUCaa-GCUGCgCGCGCCCgCGu -3'
miRNA:   3'- aCGC-AAGcaaCGACG-GCGCGGGgGCc -5'
5330 3' -60.7 NC_001798.1 + 149218 0.67 0.681636
Target:  5'- cGgGUUCGUgguaaugagaUGCcgGCCccGCGCUCCCGu -3'
miRNA:   3'- aCgCAAGCA----------ACGa-CGG--CGCGGGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.