miRNA display CGI


Results 1 - 20 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 3' -60.7 NC_001798.1 + 235 0.75 0.241728
Target:  5'- cGCGccgCGggGCUGCCuucccgcggGCGCCCCCGc -3'
miRNA:   3'- aCGCaa-GCaaCGACGG---------CGCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 323 0.66 0.701073
Target:  5'- gGCGggCGgcaggGCaGCCccgcGCGCCCCCu- -3'
miRNA:   3'- aCGCaaGCaa---CGaCGG----CGCGGGGGcc -5'
5330 3' -60.7 NC_001798.1 + 830 0.66 0.710715
Target:  5'- cGCG-UCGUcGCUGUCGU-CCgCCUGGg -3'
miRNA:   3'- aCGCaAGCAaCGACGGCGcGG-GGGCC- -5'
5330 3' -60.7 NC_001798.1 + 1668 0.67 0.691377
Target:  5'- gGCGgagcggCGggGCggcGCCGgGCCCUCGcGg -3'
miRNA:   3'- aCGCaa----GCaaCGa--CGGCgCGGGGGC-C- -5'
5330 3' -60.7 NC_001798.1 + 1698 0.67 0.662048
Target:  5'- cGCGgUUGgccgGC-GCCGC-CCCCUGGg -3'
miRNA:   3'- aCGCaAGCaa--CGaCGGCGcGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 2090 0.7 0.468197
Target:  5'- cGCGgcccugagUGgUGCC-CGCCCCCGGg -3'
miRNA:   3'- aCGCaagca---ACgACGGcGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 2198 0.67 0.691377
Target:  5'- ----cUCGggGCgGCCcCGUCCCCGGg -3'
miRNA:   3'- acgcaAGCaaCGaCGGcGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 3163 0.72 0.361205
Target:  5'- gGCGggCGUgggGCUGCCcugGCGCUCggCCGGg -3'
miRNA:   3'- aCGCaaGCAa--CGACGG---CGCGGG--GGCC- -5'
5330 3' -60.7 NC_001798.1 + 4372 0.66 0.710715
Target:  5'- gGCGggCGgcGCgggcccgGCCGCGUCCgCGc -3'
miRNA:   3'- aCGCaaGCaaCGa------CGGCGCGGGgGCc -5'
5330 3' -60.7 NC_001798.1 + 4535 0.73 0.353592
Target:  5'- cGgGggUGUUGgUGCCGCGggggaCCCCGGg -3'
miRNA:   3'- aCgCaaGCAACgACGGCGCg----GGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 6227 0.66 0.710715
Target:  5'- gGCGUgcaugCGUUGUgauucaaccGCCcuCGCCCCCGc -3'
miRNA:   3'- aCGCAa----GCAACGa--------CGGc-GCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 7471 0.69 0.558101
Target:  5'- cGCGUUcCGUUucuucucccucccggGCcGCCcCGCUCCCGGg -3'
miRNA:   3'- aCGCAA-GCAA---------------CGaCGGcGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 7644 0.67 0.662048
Target:  5'- cGCGUUCGcgaaagGC-GCgaaagGgGCCCCCGGa -3'
miRNA:   3'- aCGCAAGCaa----CGaCGg----CgCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 7724 0.66 0.710715
Target:  5'- gGCGggcCGggGCUugGCCGCcgagguGCgCCCCGGc -3'
miRNA:   3'- aCGCaa-GCaaCGA--CGGCG------CG-GGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 15967 0.68 0.602982
Target:  5'- aGCGUg---UGCUGCCugagaaaCGCCCCCaGGc -3'
miRNA:   3'- aCGCAagcaACGACGGc------GCGGGGG-CC- -5'
5330 3' -60.7 NC_001798.1 + 16607 0.77 0.19078
Target:  5'- gGCGaa-GcUGCUGCgguCGCGCCCCCGGg -3'
miRNA:   3'- aCGCaagCaACGACG---GCGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 19284 0.68 0.612816
Target:  5'- cUGCGUUCugGggGCUGUucaaCGUGgaCCCCGGg -3'
miRNA:   3'- -ACGCAAG--CaaCGACG----GCGCg-GGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 19469 0.68 0.622663
Target:  5'- cGCGcUgGUgGCgGCCGCcCCCUCGGa -3'
miRNA:   3'- aCGCaAgCAaCGaCGGCGcGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 19806 0.67 0.668917
Target:  5'- cGCGUgaccuggugCGggGCgccgcggccacccaUGCCGCGUgCCUGGg -3'
miRNA:   3'- aCGCAa--------GCaaCG--------------ACGGCGCGgGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 20057 0.66 0.717428
Target:  5'- cGCGggUGcUGCUGCCGCGCggcuaCgacuacuucgugagCCCGGc -3'
miRNA:   3'- aCGCaaGCaACGACGGCGCG-----G--------------GGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.