miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 3' -60.7 NC_001798.1 + 48658 0.67 0.681636
Target:  5'- gGCGgUCGcgGCgacccggcGCCGCGaCCgCCGGg -3'
miRNA:   3'- aCGCaAGCaaCGa-------CGGCGC-GGgGGCC- -5'
5330 3' -60.7 NC_001798.1 + 49348 0.68 0.612816
Target:  5'- gGCGUUCuccaggGCcGCCGCGgCCgCGGu -3'
miRNA:   3'- aCGCAAGcaa---CGaCGGCGCgGGgGCC- -5'
5330 3' -60.7 NC_001798.1 + 50985 0.69 0.524592
Target:  5'- cGCGuUUCGggGC-GCCGUGCCUuuugugaCCGGc -3'
miRNA:   3'- aCGC-AAGCaaCGaCGGCGCGGG-------GGCC- -5'
5330 3' -60.7 NC_001798.1 + 52427 0.66 0.701073
Target:  5'- cGUGUcggCGgcGCUucGCCGa-CCCCCGGa -3'
miRNA:   3'- aCGCAa--GCaaCGA--CGGCgcGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 54455 0.68 0.602982
Target:  5'- cGCGgcCGgggacgUGCUacaGCCGC-CCCCUGGu -3'
miRNA:   3'- aCGCaaGCa-----ACGA---CGGCGcGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 55859 0.66 0.709753
Target:  5'- gUGCaGUUUGa-GCaGCCGCGCCgcugcccgacgcgCCCGGa -3'
miRNA:   3'- -ACG-CAAGCaaCGaCGGCGCGG-------------GGGCC- -5'
5330 3' -60.7 NC_001798.1 + 56165 0.67 0.652217
Target:  5'- cGCGguggCGUcgGCgGCCccgGCGgCCCCGGc -3'
miRNA:   3'- aCGCaa--GCAa-CGaCGG---CGCgGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 56253 0.71 0.461029
Target:  5'- aGCGggCGgcgGgaGCgaCGCGCCCCCGu -3'
miRNA:   3'- aCGCaaGCaa-CgaCG--GCGCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 56837 0.76 0.220104
Target:  5'- aUGCGagCGUcGCUGCUGCGCCaccagguggaCCCGGc -3'
miRNA:   3'- -ACGCaaGCAaCGACGGCGCGG----------GGGCC- -5'
5330 3' -60.7 NC_001798.1 + 58036 0.66 0.729804
Target:  5'- gGCGgcggUGggGUcggGCCucaucGUGCCCCCGGa -3'
miRNA:   3'- aCGCaa--GCaaCGa--CGG-----CGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 58591 0.77 0.195417
Target:  5'- cGgGUgacUCGccaugGCgGCCGCGCCCCCGGc -3'
miRNA:   3'- aCgCA---AGCaa---CGaCGGCGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 59638 0.67 0.671857
Target:  5'- cUGCGgccCGUgaugGCCGCGCgCCCGa -3'
miRNA:   3'- -ACGCaa-GCAacgaCGGCGCGgGGGCc -5'
5330 3' -60.7 NC_001798.1 + 62411 0.7 0.497421
Target:  5'- cGCGgaCGUcGCcGUCGCGCCCCUc- -3'
miRNA:   3'- aCGCaaGCAaCGaCGGCGCGGGGGcc -5'
5330 3' -60.7 NC_001798.1 + 67248 0.67 0.642371
Target:  5'- -uCGaUCGgaUGCUGaCCGCGUgCCCCGGc -3'
miRNA:   3'- acGCaAGCa-ACGAC-GGCGCG-GGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 67712 0.67 0.691377
Target:  5'- cGCcaUCGUgcgcucGCUcuCCGUGCCCCUGGu -3'
miRNA:   3'- aCGcaAGCAa-----CGAc-GGCGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 70555 0.66 0.74765
Target:  5'- -aCGUUgGUcUGCUccGCCGUGaucgcgcCCCCCGGg -3'
miRNA:   3'- acGCAAgCA-ACGA--CGGCGC-------GGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 74775 0.76 0.220104
Target:  5'- gGCGccgCGUccGCcGCCGgGCCCCCGGg -3'
miRNA:   3'- aCGCaa-GCAa-CGaCGGCgCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 75263 0.68 0.612816
Target:  5'- gGuCGaccCGcaGCUGCUGCGCCgCCGGg -3'
miRNA:   3'- aC-GCaa-GCaaCGACGGCGCGGgGGCC- -5'
5330 3' -60.7 NC_001798.1 + 77691 0.69 0.553273
Target:  5'- cGCcUUCGUgguggUGCUgaagacccuguucGCCGaCGCCCCCGa -3'
miRNA:   3'- aCGcAAGCA-----ACGA-------------CGGC-GCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 78492 0.67 0.662048
Target:  5'- cGCGggaCGUcGCUcagcgcGCCGCGCUCCCc- -3'
miRNA:   3'- aCGCaa-GCAaCGA------CGGCGCGGGGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.