miRNA display CGI


Results 61 - 80 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 3' -60.7 NC_001798.1 + 81523 0.67 0.681636
Target:  5'- gGCGuUUCGgccuuccGCcgGCCcggGgGCCCCCGGg -3'
miRNA:   3'- aCGC-AAGCaa-----CGa-CGG---CgCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 83652 0.73 0.331441
Target:  5'- cGCGgUCGgcGUg--CGCGCCCCCGGg -3'
miRNA:   3'- aCGCaAGCaaCGacgGCGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 84410 0.66 0.74858
Target:  5'- cGCGggCG-UGCUGgcaCC-CGCUCCUGGa -3'
miRNA:   3'- aCGCaaGCaACGAC---GGcGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 91408 0.66 0.74858
Target:  5'- aGUucUCGaugGCcGCCaGgGCCCCCGGa -3'
miRNA:   3'- aCGcaAGCaa-CGaCGG-CgCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 95540 0.71 0.45215
Target:  5'- aGUGUUCGccGCUcccGcCCGCGaCCCCGGg -3'
miRNA:   3'- aCGCAAGCaaCGA---C-GGCGCgGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 99606 0.67 0.681636
Target:  5'- aGCcugUCGcccaUGCccGCC-CGCCCCCGGa -3'
miRNA:   3'- aCGca-AGCa---ACGa-CGGcGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 102136 0.67 0.642371
Target:  5'- cGCGUUUGacgGCggGUCGacgGCCCCCGa -3'
miRNA:   3'- aCGCAAGCaa-CGa-CGGCg--CGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 102805 0.66 0.74765
Target:  5'- cGcCGUgcCGcUGCUcagcgcgggagggGCCGCGCCCCCc- -3'
miRNA:   3'- aC-GCAa-GCaACGA-------------CGGCGCGGGGGcc -5'
5330 3' -60.7 NC_001798.1 + 103134 0.68 0.593168
Target:  5'- cGCGUUCGg-GCUGUCGCGCgUggGGg -3'
miRNA:   3'- aCGCAAGCaaCGACGGCGCGgGggCC- -5'
5330 3' -60.7 NC_001798.1 + 103575 0.66 0.739235
Target:  5'- cGCGUcCGaggcccggGCgGCgGCGCCCCCc- -3'
miRNA:   3'- aCGCAaGCaa------CGaCGgCGCGGGGGcc -5'
5330 3' -60.7 NC_001798.1 + 106367 0.67 0.642371
Target:  5'- cGCGgggCG-UGCcGCCGCgaccgcacggGCCCCCGc -3'
miRNA:   3'- aCGCaa-GCaACGaCGGCG----------CGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 107511 0.66 0.729804
Target:  5'- gGCGUgUCGUUG--GgCG-GCCCCCGGc -3'
miRNA:   3'- aCGCA-AGCAACgaCgGCgCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 109849 0.67 0.652217
Target:  5'- gGCGUcccugcUCGggUGCUGUgcgguuggggaaCGCGCCCCgaGGa -3'
miRNA:   3'- aCGCA------AGCa-ACGACG------------GCGCGGGGg-CC- -5'
5330 3' -60.7 NC_001798.1 + 114884 0.72 0.391968
Target:  5'- gGCGUcgaggcuUCGggGgUGCCgGCGUCCUCGGg -3'
miRNA:   3'- aCGCA-------AGCaaCgACGG-CGCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 114920 0.72 0.361205
Target:  5'- gGCGgaUCGUcgGCUccccGCCGCGCUgCCGGg -3'
miRNA:   3'- aCGCa-AGCAa-CGA----CGGCGCGGgGGCC- -5'
5330 3' -60.7 NC_001798.1 + 115262 0.75 0.265092
Target:  5'- cGCGUgccUCGUg---GCCGCggGCCCCCGGa -3'
miRNA:   3'- aCGCA---AGCAacgaCGGCG--CGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 117606 0.72 0.400948
Target:  5'- gUGUGUgagCGUggccGCUcgcGCCGCGCCgCCUGGc -3'
miRNA:   3'- -ACGCAa--GCAa---CGA---CGGCGCGG-GGGCC- -5'
5330 3' -60.7 NC_001798.1 + 118698 0.66 0.74858
Target:  5'- gGCGguggUCGgcgUGCUGCCGgaGgCUgCGGg -3'
miRNA:   3'- aCGCa---AGCa--ACGACGGCg-CgGGgGCC- -5'
5330 3' -60.7 NC_001798.1 + 119202 0.7 0.479055
Target:  5'- cGCGgggCGUUGCcggcccgGCC-CGgCCCCGGa -3'
miRNA:   3'- aCGCaa-GCAACGa------CGGcGCgGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 119539 1.09 0.001171
Target:  5'- cUGCGUUCGUUGCUGCCGCGCCCCCGGu -3'
miRNA:   3'- -ACGCAAGCAACGACGGCGCGGGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.