Results 41 - 60 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5330 | 3' | -60.7 | NC_001798.1 | + | 114920 | 0.72 | 0.361205 |
Target: 5'- gGCGgaUCGUcgGCUccccGCCGCGCUgCCGGg -3' miRNA: 3'- aCGCa-AGCAa-CGA----CGGCGCGGgGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 114884 | 0.72 | 0.391968 |
Target: 5'- gGCGUcgaggcuUCGggGgUGCCgGCGUCCUCGGg -3' miRNA: 3'- aCGCA-------AGCaaCgACGG-CGCGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 109849 | 0.67 | 0.652217 |
Target: 5'- gGCGUcccugcUCGggUGCUGUgcgguuggggaaCGCGCCCCgaGGa -3' miRNA: 3'- aCGCA------AGCa-ACGACG------------GCGCGGGGg-CC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 107511 | 0.66 | 0.729804 |
Target: 5'- gGCGUgUCGUUG--GgCG-GCCCCCGGc -3' miRNA: 3'- aCGCA-AGCAACgaCgGCgCGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 106367 | 0.67 | 0.642371 |
Target: 5'- cGCGgggCG-UGCcGCCGCgaccgcacggGCCCCCGc -3' miRNA: 3'- aCGCaa-GCaACGaCGGCG----------CGGGGGCc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 103575 | 0.66 | 0.739235 |
Target: 5'- cGCGUcCGaggcccggGCgGCgGCGCCCCCc- -3' miRNA: 3'- aCGCAaGCaa------CGaCGgCGCGGGGGcc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 103134 | 0.68 | 0.593168 |
Target: 5'- cGCGUUCGg-GCUGUCGCGCgUggGGg -3' miRNA: 3'- aCGCAAGCaaCGACGGCGCGgGggCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 102805 | 0.66 | 0.74765 |
Target: 5'- cGcCGUgcCGcUGCUcagcgcgggagggGCCGCGCCCCCc- -3' miRNA: 3'- aC-GCAa-GCaACGA-------------CGGCGCGGGGGcc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 102136 | 0.67 | 0.642371 |
Target: 5'- cGCGUUUGacgGCggGUCGacgGCCCCCGa -3' miRNA: 3'- aCGCAAGCaa-CGa-CGGCg--CGGGGGCc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 99606 | 0.67 | 0.681636 |
Target: 5'- aGCcugUCGcccaUGCccGCC-CGCCCCCGGa -3' miRNA: 3'- aCGca-AGCa---ACGa-CGGcGCGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 95540 | 0.71 | 0.45215 |
Target: 5'- aGUGUUCGccGCUcccGcCCGCGaCCCCGGg -3' miRNA: 3'- aCGCAAGCaaCGA---C-GGCGCgGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 91408 | 0.66 | 0.74858 |
Target: 5'- aGUucUCGaugGCcGCCaGgGCCCCCGGa -3' miRNA: 3'- aCGcaAGCaa-CGaCGG-CgCGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 84410 | 0.66 | 0.74858 |
Target: 5'- cGCGggCG-UGCUGgcaCC-CGCUCCUGGa -3' miRNA: 3'- aCGCaaGCaACGAC---GGcGCGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 83652 | 0.73 | 0.331441 |
Target: 5'- cGCGgUCGgcGUg--CGCGCCCCCGGg -3' miRNA: 3'- aCGCaAGCaaCGacgGCGCGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 81523 | 0.67 | 0.681636 |
Target: 5'- gGCGuUUCGgccuuccGCcgGCCcggGgGCCCCCGGg -3' miRNA: 3'- aCGC-AAGCaa-----CGa-CGG---CgCGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 78492 | 0.67 | 0.662048 |
Target: 5'- cGCGggaCGUcGCUcagcgcGCCGCGCUCCCc- -3' miRNA: 3'- aCGCaa-GCAaCGA------CGGCGCGGGGGcc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 77691 | 0.69 | 0.553273 |
Target: 5'- cGCcUUCGUgguggUGCUgaagacccuguucGCCGaCGCCCCCGa -3' miRNA: 3'- aCGcAAGCA-----ACGA-------------CGGC-GCGGGGGCc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 75263 | 0.68 | 0.612816 |
Target: 5'- gGuCGaccCGcaGCUGCUGCGCCgCCGGg -3' miRNA: 3'- aC-GCaa-GCaaCGACGGCGCGGgGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 74775 | 0.76 | 0.220104 |
Target: 5'- gGCGccgCGUccGCcGCCGgGCCCCCGGg -3' miRNA: 3'- aCGCaa-GCAa-CGaCGGCgCGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 70555 | 0.66 | 0.74765 |
Target: 5'- -aCGUUgGUcUGCUccGCCGUGaucgcgcCCCCCGGg -3' miRNA: 3'- acGCAAgCA-ACGA--CGGCGC-------GGGGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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