miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 3' -60.7 NC_001798.1 + 102805 0.66 0.74765
Target:  5'- cGcCGUgcCGcUGCUcagcgcgggagggGCCGCGCCCCCc- -3'
miRNA:   3'- aC-GCAa-GCaACGA-------------CGGCGCGGGGGcc -5'
5330 3' -60.7 NC_001798.1 + 70555 0.66 0.74765
Target:  5'- -aCGUUgGUcUGCUccGCCGUGaucgcgcCCCCCGGg -3'
miRNA:   3'- acGCAAgCA-ACGA--CGGCGC-------GGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 91408 0.66 0.74858
Target:  5'- aGUucUCGaugGCcGCCaGgGCCCCCGGa -3'
miRNA:   3'- aCGcaAGCaa-CGaCGG-CgCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 118698 0.66 0.74858
Target:  5'- gGCGguggUCGgcgUGCUGCCGgaGgCUgCGGg -3'
miRNA:   3'- aCGCa---AGCa--ACGACGGCg-CgGGgGCC- -5'
5330 3' -60.7 NC_001798.1 + 139641 0.66 0.74858
Target:  5'- gGCGaggccggUGgcGCUGUCGuCGUCCUCGGg -3'
miRNA:   3'- aCGCaa-----GCaaCGACGGC-GCGGGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 123183 0.66 0.729804
Target:  5'- aGUcgUCGggGCgcGCCgcGCGCCCCCGc -3'
miRNA:   3'- aCGcaAGCaaCGa-CGG--CGCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 126792 0.66 0.729804
Target:  5'- cGCGcccCGgcGCUccagccguGCCGCGCCCCgGc -3'
miRNA:   3'- aCGCaa-GCaaCGA--------CGGCGCGGGGgCc -5'
5330 3' -60.7 NC_001798.1 + 123139 0.66 0.704937
Target:  5'- cGCGUcCGgaguccgccccgcGCcGCCGcCGCCCCCGu -3'
miRNA:   3'- aCGCAaGCaa-----------CGaCGGC-GCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 55859 0.66 0.709753
Target:  5'- gUGCaGUUUGa-GCaGCCGCGCCgcugcccgacgcgCCCGGa -3'
miRNA:   3'- -ACG-CAAGCaaCGaCGGCGCGG-------------GGGCC- -5'
5330 3' -60.7 NC_001798.1 + 6227 0.66 0.710715
Target:  5'- gGCGUgcaugCGUUGUgauucaaccGCCcuCGCCCCCGc -3'
miRNA:   3'- aCGCAa----GCAACGa--------CGGc-GCGGGGGCc -5'
5330 3' -60.7 NC_001798.1 + 4372 0.66 0.710715
Target:  5'- gGCGggCGgcGCgggcccgGCCGCGUCCgCGc -3'
miRNA:   3'- aCGCaaGCaaCGa------CGGCGCGGGgGCc -5'
5330 3' -60.7 NC_001798.1 + 830 0.66 0.710715
Target:  5'- cGCG-UCGUcGCUGUCGU-CCgCCUGGg -3'
miRNA:   3'- aCGCaAGCAaCGACGGCGcGG-GGGCC- -5'
5330 3' -60.7 NC_001798.1 + 129733 0.66 0.710715
Target:  5'- cGCGgcCGacucGCUcGCCGCGCCCgCCu- -3'
miRNA:   3'- aCGCaaGCaa--CGA-CGGCGCGGG-GGcc -5'
5330 3' -60.7 NC_001798.1 + 127707 0.66 0.710715
Target:  5'- gGCGggCGgcacGuCUcCCGCGCCCgCGGg -3'
miRNA:   3'- aCGCaaGCaa--C-GAcGGCGCGGGgGCC- -5'
5330 3' -60.7 NC_001798.1 + 7724 0.66 0.710715
Target:  5'- gGCGggcCGggGCUugGCCGCcgagguGCgCCCCGGc -3'
miRNA:   3'- aCGCaa-GCaaCGA--CGGCG------CG-GGGGCC- -5'
5330 3' -60.7 NC_001798.1 + 20057 0.66 0.717428
Target:  5'- cGCGggUGcUGCUGCCGCGCggcuaCgacuacuucgugagCCCGGc -3'
miRNA:   3'- aCGCaaGCaACGACGGCGCG-----G--------------GGGCC- -5'
5330 3' -60.7 NC_001798.1 + 130616 0.66 0.720294
Target:  5'- aGCGUg----GCgcggGCCGUGCCCCaccuGGg -3'
miRNA:   3'- aCGCAagcaaCGa---CGGCGCGGGGg---CC- -5'
5330 3' -60.7 NC_001798.1 + 37980 0.66 0.720294
Target:  5'- cGCacgaCGgcGCUGCUGUGCUCCgCGGc -3'
miRNA:   3'- aCGcaa-GCaaCGACGGCGCGGGG-GCC- -5'
5330 3' -60.7 NC_001798.1 + 26453 0.66 0.720294
Target:  5'- gGCGccUGacGC-GCCGCGCCCCCc- -3'
miRNA:   3'- aCGCaaGCaaCGaCGGCGCGGGGGcc -5'
5330 3' -60.7 NC_001798.1 + 142880 0.66 0.729804
Target:  5'- gGCGUUCGUcgcGCUGCCGa-CCCauaCGc -3'
miRNA:   3'- aCGCAAGCAa--CGACGGCgcGGGg--GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.