Results 81 - 100 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5330 | 3' | -60.7 | NC_001798.1 | + | 99606 | 0.67 | 0.681636 |
Target: 5'- aGCcugUCGcccaUGCccGCC-CGCCCCCGGa -3' miRNA: 3'- aCGca-AGCa---ACGa-CGGcGCGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 59638 | 0.67 | 0.671857 |
Target: 5'- cUGCGgccCGUgaugGCCGCGCgCCCGa -3' miRNA: 3'- -ACGCaa-GCAacgaCGGCGCGgGGGCc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 128584 | 0.67 | 0.671857 |
Target: 5'- cGCGaguacCGccGC-GCCGUGCUCCCGGc -3' miRNA: 3'- aCGCaa---GCaaCGaCGGCGCGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 152218 | 0.67 | 0.671857 |
Target: 5'- gGCGUcggCGggGCggggGgCGCgGCCCCCGcGg -3' miRNA: 3'- aCGCAa--GCaaCGa---CgGCG-CGGGGGC-C- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 150643 | 0.67 | 0.671857 |
Target: 5'- gGCGggcUCGgcccuggGCgggcucgGCCGgggcgcCGCCCCCGGg -3' miRNA: 3'- aCGCa--AGCaa-----CGa------CGGC------GCGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 19806 | 0.67 | 0.668917 |
Target: 5'- cGCGUgaccuggugCGggGCgccgcggccacccaUGCCGCGUgCCUGGg -3' miRNA: 3'- aCGCAa--------GCaaCG--------------ACGGCGCGgGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 1698 | 0.67 | 0.662048 |
Target: 5'- cGCGgUUGgccgGC-GCCGC-CCCCUGGg -3' miRNA: 3'- aCGCaAGCaa--CGaCGGCGcGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 48658 | 0.67 | 0.681636 |
Target: 5'- gGCGgUCGcgGCgacccggcGCCGCGaCCgCCGGg -3' miRNA: 3'- aCGCaAGCaaCGa-------CGGCGC-GGgGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 67712 | 0.67 | 0.691377 |
Target: 5'- cGCcaUCGUgcgcucGCUcuCCGUGCCCCUGGu -3' miRNA: 3'- aCGcaAGCAa-----CGAc-GGCGCGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 2198 | 0.67 | 0.691377 |
Target: 5'- ----cUCGggGCgGCCcCGUCCCCGGg -3' miRNA: 3'- acgcaAGCaaCGaCGGcGCGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 6227 | 0.66 | 0.710715 |
Target: 5'- gGCGUgcaugCGUUGUgauucaaccGCCcuCGCCCCCGc -3' miRNA: 3'- aCGCAa----GCAACGa--------CGGc-GCGGGGGCc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 55859 | 0.66 | 0.709753 |
Target: 5'- gUGCaGUUUGa-GCaGCCGCGCCgcugcccgacgcgCCCGGa -3' miRNA: 3'- -ACG-CAAGCaaCGaCGGCGCGG-------------GGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 123139 | 0.66 | 0.704937 |
Target: 5'- cGCGUcCGgaguccgccccgcGCcGCCGcCGCCCCCGu -3' miRNA: 3'- aCGCAaGCaa-----------CGaCGGC-GCGGGGGCc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 323 | 0.66 | 0.701073 |
Target: 5'- gGCGggCGgcaggGCaGCCccgcGCGCCCCCu- -3' miRNA: 3'- aCGCaaGCaa---CGaCGG----CGCGGGGGcc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 52427 | 0.66 | 0.701073 |
Target: 5'- cGUGUcggCGgcGCUucGCCGa-CCCCCGGa -3' miRNA: 3'- aCGCAa--GCaaCGA--CGGCgcGGGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 127464 | 0.66 | 0.701073 |
Target: 5'- cGCGggggggaGggGCUGCCGCGagCUCGGc -3' miRNA: 3'- aCGCaag----CaaCGACGGCGCggGGGCC- -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 130066 | 0.66 | 0.701073 |
Target: 5'- gGCuGgcCGgagcccgGCccGCCGCGCCCCCGc -3' miRNA: 3'- aCG-CaaGCaa-----CGa-CGGCGCGGGGGCc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 151016 | 0.66 | 0.701073 |
Target: 5'- cGCGUgaucagggCGUacUGCUgcGCCGCGUCgCCCa- -3' miRNA: 3'- aCGCAa-------GCA--ACGA--CGGCGCGG-GGGcc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 154661 | 0.66 | 0.701073 |
Target: 5'- gGCGggCGgcaggGCaGCCccgcGCGCCCCCu- -3' miRNA: 3'- aCGCaaGCaa---CGaCGG----CGCGGGGGcc -5' |
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5330 | 3' | -60.7 | NC_001798.1 | + | 1668 | 0.67 | 0.691377 |
Target: 5'- gGCGgagcggCGggGCggcGCCGgGCCCUCGcGg -3' miRNA: 3'- aCGCaa----GCaaCGa--CGGCgCGGGGGC-C- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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