Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5330 | 5' | -52 | NC_001798.1 | + | 80351 | 0.66 | 0.985037 |
Target: 5'- -cCGGGGGccgUGGCGcCGGCGGAccUGaCCg -3' miRNA: 3'- cuGUCCCU---ACUGC-GUCGUCUuuAC-GG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 111528 | 0.66 | 0.985037 |
Target: 5'- gGGCAGGGGgguuuggaccGACGCGuccuGCAuGAGA-GCCg -3' miRNA: 3'- -CUGUCCCUa---------CUGCGU----CGU-CUUUaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 143572 | 0.66 | 0.985037 |
Target: 5'- cGAUGGGGgcGGUGgGGCGGGccUGCCg -3' miRNA: 3'- -CUGUCCCuaCUGCgUCGUCUuuACGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 41111 | 0.66 | 0.98392 |
Target: 5'- cGCGGccggcgccgccauguGGGUGGCgGCGGCGGAcugcuuUGCCg -3' miRNA: 3'- cUGUC---------------CCUACUG-CGUCGUCUuu----ACGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 116447 | 0.66 | 0.983141 |
Target: 5'- uACGGGGGggcGACGUGGguGAuguccgggGCCc -3' miRNA: 3'- cUGUCCCUa--CUGCGUCguCUuua-----CGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 1675 | 0.66 | 0.983141 |
Target: 5'- --uGGGGcgGGCggaGCGGCGGGGcgGCg -3' miRNA: 3'- cugUCCCuaCUG---CGUCGUCUUuaCGg -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 16933 | 0.66 | 0.983141 |
Target: 5'- cGCGGGGAUGuACuGguGCuGGAAAcuguugGCCa -3' miRNA: 3'- cUGUCCCUAC-UG-CguCG-UCUUUa-----CGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 151316 | 0.66 | 0.982538 |
Target: 5'- aGCAGGGGcgcguaGGCGCggcgcaggcuggucAGCAGGAA-GCCc -3' miRNA: 3'- cUGUCCCUa-----CUGCG--------------UCGUCUUUaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 110472 | 0.66 | 0.981069 |
Target: 5'- uACAGGGG-GGCGguGCugccgcUGCCg -3' miRNA: 3'- cUGUCCCUaCUGCguCGucuuu-ACGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 128243 | 0.66 | 0.981069 |
Target: 5'- cGCGGGGAcggugcUGGcCGCGGCGGGcgGcgGCg -3' miRNA: 3'- cUGUCCCU------ACU-GCGUCGUCU--UuaCGg -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 118232 | 0.66 | 0.981069 |
Target: 5'- gGGCGGGGgcG-CGCGGCGGccggGCg -3' miRNA: 3'- -CUGUCCCuaCuGCGUCGUCuuuaCGg -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 118190 | 0.66 | 0.981069 |
Target: 5'- gGGCGGGGgcG-CGCGGCGGccggGCg -3' miRNA: 3'- -CUGUCCCuaCuGCGUCGUCuuuaCGg -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 118148 | 0.66 | 0.981069 |
Target: 5'- gGGCGGGGgcG-CGCGGCGGccggGCg -3' miRNA: 3'- -CUGUCCCuaCuGCGUCGUCuuuaCGg -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 148492 | 0.66 | 0.978813 |
Target: 5'- gGACGGGGG-GACGgGcCGGggGgacggGCCg -3' miRNA: 3'- -CUGUCCCUaCUGCgUcGUCuuUa----CGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 148231 | 0.66 | 0.978813 |
Target: 5'- gGACGGGGG-GACGgGGggaCGGggGgacggGCCg -3' miRNA: 3'- -CUGUCCCUaCUGCgUC---GUCuuUa----CGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 115297 | 0.66 | 0.978813 |
Target: 5'- -uCAGGGAcaGCGCcaucAGCGGAGGggggGCCu -3' miRNA: 3'- cuGUCCCUacUGCG----UCGUCUUUa---CGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 154508 | 0.66 | 0.978813 |
Target: 5'- cGGCAGGacGggGAC-UAGCAGGcuGUGCCg -3' miRNA: 3'- -CUGUCC--CuaCUGcGUCGUCUu-UACGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 126123 | 0.66 | 0.978813 |
Target: 5'- cGACGGGGGUccugGGCGCgcgAGCGG----GCCg -3' miRNA: 3'- -CUGUCCCUA----CUGCG---UCGUCuuuaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 104671 | 0.66 | 0.976363 |
Target: 5'- gGACGacGAUGACGCuccuGCGGAg--GCCg -3' miRNA: 3'- -CUGUccCUACUGCGu---CGUCUuuaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 115503 | 0.66 | 0.976363 |
Target: 5'- -cCAGGGGcUGuuCGCGGCGGGAAacgGCa -3' miRNA: 3'- cuGUCCCU-ACu-GCGUCGUCUUUa--CGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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