miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 5' -52 NC_001798.1 + 118148 0.66 0.981069
Target:  5'- gGGCGGGGgcG-CGCGGCGGccggGCg -3'
miRNA:   3'- -CUGUCCCuaCuGCGUCGUCuuuaCGg -5'
5330 5' -52 NC_001798.1 + 93744 0.67 0.960579
Target:  5'- aGGgGGcGGAUGACGCGGaccggauggggguUAGGGggGCCg -3'
miRNA:   3'- -CUgUC-CCUACUGCGUC-------------GUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 1742 0.67 0.960945
Target:  5'- cGCGGGGcgGuCGCcggGGCGGAGuccggGCCc -3'
miRNA:   3'- cUGUCCCuaCuGCG---UCGUCUUua---CGG- -5'
5330 5' -52 NC_001798.1 + 118708 0.67 0.964475
Target:  5'- --gGGGGGUGGCgGCGGUGGucggcGUGCUg -3'
miRNA:   3'- cugUCCCUACUG-CGUCGUCuu---UACGG- -5'
5330 5' -52 NC_001798.1 + 8174 0.67 0.964475
Target:  5'- aGACGGGccGcgGGC-CAGCAGAcggGCCg -3'
miRNA:   3'- -CUGUCC--CuaCUGcGUCGUCUuuaCGG- -5'
5330 5' -52 NC_001798.1 + 113363 0.67 0.964475
Target:  5'- -cCGGGGAUGGC-CGGgAGGGAcacgGCCc -3'
miRNA:   3'- cuGUCCCUACUGcGUCgUCUUUa---CGG- -5'
5330 5' -52 NC_001798.1 + 98346 0.67 0.964475
Target:  5'- cGguGGGGUccCGCGGCGGggGcugguggcUGCCg -3'
miRNA:   3'- cUguCCCUAcuGCGUCGUCuuU--------ACGG- -5'
5330 5' -52 NC_001798.1 + 10078 0.67 0.966809
Target:  5'- uGGCAGGccGUaaaucgcgucgcccGACGCAGCGGcGAGUGCUg -3'
miRNA:   3'- -CUGUCCc-UA--------------CUGCGUCGUC-UUUACGG- -5'
5330 5' -52 NC_001798.1 + 117789 0.67 0.967455
Target:  5'- uGCAGGGAUGACGgagaugaUAGCGuGAuuGAcGCCc -3'
miRNA:   3'- cUGUCCCUACUGC-------GUCGU-CU--UUaCGG- -5'
5330 5' -52 NC_001798.1 + 83340 0.67 0.967775
Target:  5'- uGGCGGGGGUGccCGC-GCGGAc--GCCc -3'
miRNA:   3'- -CUGUCCCUACu-GCGuCGUCUuuaCGG- -5'
5330 5' -52 NC_001798.1 + 41398 0.67 0.967775
Target:  5'- gGACGGGcGGUGGCGCcGGCAuGuauuAUaGCCg -3'
miRNA:   3'- -CUGUCC-CUACUGCG-UCGU-Cuu--UA-CGG- -5'
5330 5' -52 NC_001798.1 + 57173 0.67 0.970852
Target:  5'- gGACGGGGA--GCGCGGCcccga-GCCa -3'
miRNA:   3'- -CUGUCCCUacUGCGUCGucuuuaCGG- -5'
5330 5' -52 NC_001798.1 + 68751 0.68 0.953173
Target:  5'- -cCGGGGcgcUGGCGCAGgGGGGugaGCCg -3'
miRNA:   3'- cuGUCCCu--ACUGCGUCgUCUUua-CGG- -5'
5330 5' -52 NC_001798.1 + 6470 0.68 0.953173
Target:  5'- --aGGGGcgGGCGUGGCGGGcaGGUGUg -3'
miRNA:   3'- cugUCCCuaCUGCGUCGUCU--UUACGg -5'
5330 5' -52 NC_001798.1 + 6363 0.68 0.953173
Target:  5'- --aGGGGcgGGCGUGGCGGGcaGGUGUg -3'
miRNA:   3'- cugUCCCuaCUGCGUCGUCU--UUACGg -5'
5330 5' -52 NC_001798.1 + 3532 0.68 0.953173
Target:  5'- cGACAGGGA--GCGCGgggccguccGCGGGu-UGCCc -3'
miRNA:   3'- -CUGUCCCUacUGCGU---------CGUCUuuACGG- -5'
5330 5' -52 NC_001798.1 + 52130 0.68 0.954804
Target:  5'- aGGCGGGGAUccacaaauaacucccGuCGCcgggcGGCGGAGggGCCg -3'
miRNA:   3'- -CUGUCCCUA---------------CuGCG-----UCGUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 77518 0.68 0.957179
Target:  5'- uGCGGGcGcAUGGCGCccuGGCGGAcgcGGUGUCg -3'
miRNA:   3'- cUGUCC-C-UACUGCG---UCGUCU---UUACGG- -5'
5330 5' -52 NC_001798.1 + 43156 0.68 0.957179
Target:  5'- aGCGGGG--GGCcCGGCGGGGcgGCCu -3'
miRNA:   3'- cUGUCCCuaCUGcGUCGUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 109901 0.68 0.953173
Target:  5'- --aGGGGGUGGgGUGGgGGAAA-GCCg -3'
miRNA:   3'- cugUCCCUACUgCGUCgUCUUUaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.