miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 5' -52 NC_001798.1 + 127260 0.68 0.952759
Target:  5'- cGCGGGGGcgGGCGCGggaaaaaagccgcGCGGggGcGCCc -3'
miRNA:   3'- cUGUCCCUa-CUGCGU-------------CGUCuuUaCGG- -5'
5330 5' -52 NC_001798.1 + 141698 0.68 0.953173
Target:  5'- --gGGGGAUG-CGCAGgGGGAGaGCg -3'
miRNA:   3'- cugUCCCUACuGCGUCgUCUUUaCGg -5'
5330 5' -52 NC_001798.1 + 109901 0.68 0.953173
Target:  5'- --aGGGGGUGGgGUGGgGGAAA-GCCg -3'
miRNA:   3'- cugUCCCUACUgCGUCgUCUUUaCGG- -5'
5330 5' -52 NC_001798.1 + 5274 0.68 0.957179
Target:  5'- cGCGGGGGccgcGGCccGCAGCAGGuccGCCa -3'
miRNA:   3'- cUGUCCCUa---CUG--CGUCGUCUuuaCGG- -5'
5330 5' -52 NC_001798.1 + 43156 0.68 0.957179
Target:  5'- aGCGGGG--GGCcCGGCGGGGcgGCCu -3'
miRNA:   3'- cUGUCCCuaCUGcGUCGUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 77518 0.68 0.957179
Target:  5'- uGCGGGcGcAUGGCGCccuGGCGGAcgcGGUGUCg -3'
miRNA:   3'- cUGUCC-C-UACUGCG---UCGUCU---UUACGG- -5'
5330 5' -52 NC_001798.1 + 52130 0.68 0.954804
Target:  5'- aGGCGGGGAUccacaaauaacucccGuCGCcgggcGGCGGAGggGCCg -3'
miRNA:   3'- -CUGUCCCUA---------------CuGCG-----UCGUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 3532 0.68 0.953173
Target:  5'- cGACAGGGA--GCGCGgggccguccGCGGGu-UGCCc -3'
miRNA:   3'- -CUGUCCCUacUGCGU---------CGUCUuuACGG- -5'
5330 5' -52 NC_001798.1 + 6363 0.68 0.953173
Target:  5'- --aGGGGcgGGCGUGGCGGGcaGGUGUg -3'
miRNA:   3'- cugUCCCuaCUGCGUCGUCU--UUACGg -5'
5330 5' -52 NC_001798.1 + 6470 0.68 0.953173
Target:  5'- --aGGGGcgGGCGUGGCGGGcaGGUGUg -3'
miRNA:   3'- cugUCCCuaCUGCGUCGUCU--UUACGg -5'
5330 5' -52 NC_001798.1 + 68751 0.68 0.953173
Target:  5'- -cCGGGGcgcUGGCGCAGgGGGGugaGCCg -3'
miRNA:   3'- cuGUCCCu--ACUGCGUCgUCUUua-CGG- -5'
5330 5' -52 NC_001798.1 + 6319 0.69 0.917523
Target:  5'- gGGCGGGGGUGggcacggGCGUAaguGCGGGugcAUGCCu -3'
miRNA:   3'- -CUGUCCCUAC-------UGCGU---CGUCUu--UACGG- -5'
5330 5' -52 NC_001798.1 + 146889 0.69 0.923887
Target:  5'- aACAGGGAguccucgccgcUGugGCccuGGCGGAcg-GCCg -3'
miRNA:   3'- cUGUCCCU-----------ACugCG---UCGUCUuuaCGG- -5'
5330 5' -52 NC_001798.1 + 120062 0.69 0.923887
Target:  5'- --gAGGGAaggGGCGCGGCGGGAcgGg- -3'
miRNA:   3'- cugUCCCUa--CUGCGUCGUCUUuaCgg -5'
5330 5' -52 NC_001798.1 + 941 0.69 0.923887
Target:  5'- cGGCGGGGGgcaGGCgGCGGCAGGcgcggcgugcGggGCCu -3'
miRNA:   3'- -CUGUCCCUa--CUG-CGUCGUCU----------UuaCGG- -5'
5330 5' -52 NC_001798.1 + 129923 0.69 0.929404
Target:  5'- cGCGGGGAccugcgcgUGGCcgGCGGCAGcGAgGCCg -3'
miRNA:   3'- cUGUCCCU--------ACUG--CGUCGUCuUUaCGG- -5'
5330 5' -52 NC_001798.1 + 131974 0.69 0.934665
Target:  5'- gGACGGGGGacgucuccgGGcCGCGGCGGAGAcGaCCg -3'
miRNA:   3'- -CUGUCCCUa--------CU-GCGUCGUCUUUaC-GG- -5'
5330 5' -52 NC_001798.1 + 8054 0.69 0.934665
Target:  5'- --gGGGGggGGCGC-GCAGcuGAGUGCUc -3'
miRNA:   3'- cugUCCCuaCUGCGuCGUC--UUUACGG- -5'
5330 5' -52 NC_001798.1 + 145027 0.69 0.934665
Target:  5'- gGGCucGGGcUGGCGCuGGgGGAGGUGCUg -3'
miRNA:   3'- -CUGu-CCCuACUGCG-UCgUCUUUACGG- -5'
5330 5' -52 NC_001798.1 + 132920 0.69 0.912086
Target:  5'- cGC-GGGAUGACGCgggccccgGGCAGGgcgccAGUGCUc -3'
miRNA:   3'- cUGuCCCUACUGCG--------UCGUCU-----UUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.