miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 5' -52 NC_001798.1 + 119504 1.12 0.004301
Target:  5'- aGACAGGGAUGACGCAGCAGAAAUGCCc -3'
miRNA:   3'- -CUGUCCCUACUGCGUCGUCUUUACGG- -5'
5330 5' -52 NC_001798.1 + 42919 0.85 0.221169
Target:  5'- -cCAGGGGcUGGCGCggGGCGGGAAUGCCg -3'
miRNA:   3'- cuGUCCCU-ACUGCG--UCGUCUUUACGG- -5'
5330 5' -52 NC_001798.1 + 87124 0.77 0.54656
Target:  5'- cGGCgAGGGcgGAUGCGGCAGGGcgguugGCCa -3'
miRNA:   3'- -CUG-UCCCuaCUGCGUCGUCUUua----CGG- -5'
5330 5' -52 NC_001798.1 + 29871 0.77 0.526039
Target:  5'- --uGGGGAcuagaaacacggUGGCGCgcuGGCGGAAGUGCCg -3'
miRNA:   3'- cugUCCCU------------ACUGCG---UCGUCUUUACGG- -5'
5330 5' -52 NC_001798.1 + 102240 0.77 0.536265
Target:  5'- cGCAGGGAcGACGCGGCGGccgcgcgcGCCg -3'
miRNA:   3'- cUGUCCCUaCUGCGUCGUCuuua----CGG- -5'
5330 5' -52 NC_001798.1 + 127148 0.76 0.56733
Target:  5'- gGACGGGGAagggGGCGC-GCGGGGcUGCCc -3'
miRNA:   3'- -CUGUCCCUa---CUGCGuCGUCUUuACGG- -5'
5330 5' -52 NC_001798.1 + 118462 0.75 0.650687
Target:  5'- cGGCGGGGGggggugccgugggUGugGCGGCGGGGcgcggGCCg -3'
miRNA:   3'- -CUGUCCCU-------------ACugCGUCGUCUUua---CGG- -5'
5330 5' -52 NC_001798.1 + 139386 0.75 0.62633
Target:  5'- gGugAGGGGggaaucggccgugGGCGCGGCGGAGGcGCCc -3'
miRNA:   3'- -CugUCCCUa------------CUGCGUCGUCUUUaCGG- -5'
5330 5' -52 NC_001798.1 + 122200 0.74 0.724837
Target:  5'- aGACGGGGA--ACGUGGCGGAccUGCUg -3'
miRNA:   3'- -CUGUCCCUacUGCGUCGUCUuuACGG- -5'
5330 5' -52 NC_001798.1 + 40998 0.74 0.702154
Target:  5'- aACGGGGGUGugGCggggggguauuaaGGCAGGGgcagcucgcccccGUGCCu -3'
miRNA:   3'- cUGUCCCUACugCG-------------UCGUCUU-------------UACGG- -5'
5330 5' -52 NC_001798.1 + 16536 0.73 0.764942
Target:  5'- -cCAGGGAgggUGugGUcgacGGCGGggGUGUCg -3'
miRNA:   3'- cuGUCCCU---ACugCG----UCGUCuuUACGG- -5'
5330 5' -52 NC_001798.1 + 65043 0.73 0.774678
Target:  5'- aGGCGGGGAUGuCGCGGUAGcucAGAU-CCu -3'
miRNA:   3'- -CUGUCCCUACuGCGUCGUC---UUUAcGG- -5'
5330 5' -52 NC_001798.1 + 30243 0.73 0.75508
Target:  5'- uGGCGGGGggGGgGCuGCGGgcGUGUCg -3'
miRNA:   3'- -CUGUCCCuaCUgCGuCGUCuuUACGG- -5'
5330 5' -52 NC_001798.1 + 152213 0.73 0.774678
Target:  5'- cGGCGGGGcggggGGCGCGGCccccgcgggaGGGGcgGCCg -3'
miRNA:   3'- -CUGUCCCua---CUGCGUCG----------UCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 48428 0.73 0.735017
Target:  5'- -uCAGGGAgUGGCGCAGCuGcuucAUGCCc -3'
miRNA:   3'- cuGUCCCU-ACUGCGUCGuCuu--UACGG- -5'
5330 5' -52 NC_001798.1 + 20674 0.73 0.735017
Target:  5'- cGCGGGGGaGGCGCGcgcgcgcuucGCGGAGGUGUCc -3'
miRNA:   3'- cUGUCCCUaCUGCGU----------CGUCUUUACGG- -5'
5330 5' -52 NC_001798.1 + 131210 0.73 0.764942
Target:  5'- cGGCGcGGAcGACGaggaGGCGGggGUGCCc -3'
miRNA:   3'- -CUGUcCCUaCUGCg---UCGUCuuUACGG- -5'
5330 5' -52 NC_001798.1 + 116161 0.72 0.812158
Target:  5'- aAUAGGGAgu-UGCAGUAGAAGuauuUGCCg -3'
miRNA:   3'- cUGUCCCUacuGCGUCGUCUUU----ACGG- -5'
5330 5' -52 NC_001798.1 + 52182 0.72 0.803027
Target:  5'- aGCGGcGGGUGGCGgGGCGcGGAuUGCCc -3'
miRNA:   3'- cUGUC-CCUACUGCgUCGU-CUUuACGG- -5'
5330 5' -52 NC_001798.1 + 151786 0.72 0.812158
Target:  5'- aGGCGGGGcgcgucGGCGUgcGGCGGGGcgGCCg -3'
miRNA:   3'- -CUGUCCCua----CUGCG--UCGUCUUuaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.