miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 5' -52 NC_001798.1 + 116161 0.72 0.812158
Target:  5'- aAUAGGGAgu-UGCAGUAGAAGuauuUGCCg -3'
miRNA:   3'- cUGUCCCUacuGCGUCGUCUUU----ACGG- -5'
5330 5' -52 NC_001798.1 + 114307 0.71 0.829017
Target:  5'- aGGCGGGGGUGcggaagcACGCGGUAGGGugggguguAUGCg -3'
miRNA:   3'- -CUGUCCCUAC-------UGCGUCGUCUU--------UACGg -5'
5330 5' -52 NC_001798.1 + 41975 0.71 0.829886
Target:  5'- cGCGGGGAgggcgGACGCA-CGGAuGUGCg -3'
miRNA:   3'- cUGUCCCUa----CUGCGUcGUCUuUACGg -5'
5330 5' -52 NC_001798.1 + 52861 0.71 0.838465
Target:  5'- uGCGGGGGagggcUGAUGUAGCGGggGaGCg -3'
miRNA:   3'- cUGUCCCU-----ACUGCGUCGUCuuUaCGg -5'
5330 5' -52 NC_001798.1 + 6699 0.71 0.838465
Target:  5'- gGGCGGGGggGugGUgguagugguGGCGGAAGgaaacggGCCg -3'
miRNA:   3'- -CUGUCCCuaCugCG---------UCGUCUUUa------CGG- -5'
5330 5' -52 NC_001798.1 + 123407 0.71 0.838465
Target:  5'- cGGCGGGGGgcgcgcgcaGGCGCGGCGGGuggGCg -3'
miRNA:   3'- -CUGUCCCUa--------CUGCGUCGUCUuuaCGg -5'
5330 5' -52 NC_001798.1 + 132785 0.71 0.838465
Target:  5'- aGCGcGGGAUGACGCgggccccgGGCAGGgc-GCCa -3'
miRNA:   3'- cUGU-CCCUACUGCG--------UCGUCUuuaCGG- -5'
5330 5' -52 NC_001798.1 + 127528 0.7 0.870696
Target:  5'- -cCGGGGcggGGCGCGGgGGAGGcgGCCg -3'
miRNA:   3'- cuGUCCCua-CUGCGUCgUCUUUa-CGG- -5'
5330 5' -52 NC_001798.1 + 123598 0.7 0.870696
Target:  5'- cGCGGGGgcGGCGguGCGGggGcGaCCc -3'
miRNA:   3'- cUGUCCCuaCUGCguCGUCuuUaC-GG- -5'
5330 5' -52 NC_001798.1 + 68480 0.7 0.878197
Target:  5'- -cCGGGGGcgcgGGCGCaccGGCGgGGAAUGCCu -3'
miRNA:   3'- cuGUCCCUa---CUGCG---UCGU-CUUUACGG- -5'
5330 5' -52 NC_001798.1 + 108268 0.7 0.878197
Target:  5'- aGCGGGGAcGGCGCcaacuGCGGAAaccgGUGCa -3'
miRNA:   3'- cUGUCCCUaCUGCGu----CGUCUU----UACGg -5'
5330 5' -52 NC_001798.1 + 119328 0.7 0.885463
Target:  5'- cGCGGGGGccuaAUGCGGCGGGAGgcguggGCCg -3'
miRNA:   3'- cUGUCCCUac--UGCGUCGUCUUUa-----CGG- -5'
5330 5' -52 NC_001798.1 + 98237 0.7 0.899271
Target:  5'- cGGCAGGGuggagcggaucGUGGCGguGCcGggGcGCCc -3'
miRNA:   3'- -CUGUCCC-----------UACUGCguCGuCuuUaCGG- -5'
5330 5' -52 NC_001798.1 + 1803 0.7 0.899271
Target:  5'- cGCGGGGAUGGCGgc-CGGGAccGCCu -3'
miRNA:   3'- cUGUCCCUACUGCgucGUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 18079 0.7 0.899271
Target:  5'- gGACGGGGGgcggauuguUGGC-CAGCAGGuaguggGCCa -3'
miRNA:   3'- -CUGUCCCU---------ACUGcGUCGUCUuua---CGG- -5'
5330 5' -52 NC_001798.1 + 152477 0.7 0.899271
Target:  5'- gGGCGGGGc-GGCGCAGCGcgcg-GCCa -3'
miRNA:   3'- -CUGUCCCuaCUGCGUCGUcuuuaCGG- -5'
5330 5' -52 NC_001798.1 + 100364 0.7 0.905804
Target:  5'- -cCGGGGGgccgcGGCGCggucGGCGGGAGcUGCCg -3'
miRNA:   3'- cuGUCCCUa----CUGCG----UCGUCUUU-ACGG- -5'
5330 5' -52 NC_001798.1 + 152069 0.7 0.905804
Target:  5'- cGCGGaGGcgGGCGCGGCGagcGAGucgGCCg -3'
miRNA:   3'- cUGUC-CCuaCUGCGUCGU---CUUua-CGG- -5'
5330 5' -52 NC_001798.1 + 134976 0.69 0.912086
Target:  5'- cGCAGGGAUaggGGCagGCGGCGGGGAaGCg -3'
miRNA:   3'- cUGUCCCUA---CUG--CGUCGUCUUUaCGg -5'
5330 5' -52 NC_001798.1 + 132920 0.69 0.912086
Target:  5'- cGC-GGGAUGACGCgggccccgGGCAGGgcgccAGUGCUc -3'
miRNA:   3'- cUGuCCCUACUGCG--------UCGUCU-----UUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.