miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 5' -52 NC_001798.1 + 6319 0.69 0.917523
Target:  5'- gGGCGGGGGUGggcacggGCGUAaguGCGGGugcAUGCCu -3'
miRNA:   3'- -CUGUCCCUAC-------UGCGU---CGUCUu--UACGG- -5'
5330 5' -52 NC_001798.1 + 146889 0.69 0.923887
Target:  5'- aACAGGGAguccucgccgcUGugGCccuGGCGGAcg-GCCg -3'
miRNA:   3'- cUGUCCCU-----------ACugCG---UCGUCUuuaCGG- -5'
5330 5' -52 NC_001798.1 + 120062 0.69 0.923887
Target:  5'- --gAGGGAaggGGCGCGGCGGGAcgGg- -3'
miRNA:   3'- cugUCCCUa--CUGCGUCGUCUUuaCgg -5'
5330 5' -52 NC_001798.1 + 941 0.69 0.923887
Target:  5'- cGGCGGGGGgcaGGCgGCGGCAGGcgcggcgugcGggGCCu -3'
miRNA:   3'- -CUGUCCCUa--CUG-CGUCGUCU----------UuaCGG- -5'
5330 5' -52 NC_001798.1 + 129923 0.69 0.929404
Target:  5'- cGCGGGGAccugcgcgUGGCcgGCGGCAGcGAgGCCg -3'
miRNA:   3'- cUGUCCCU--------ACUG--CGUCGUCuUUaCGG- -5'
5330 5' -52 NC_001798.1 + 118939 0.69 0.934665
Target:  5'- cGGCGGGGggGGgGCGucgggacucGCGGAGG-GCCg -3'
miRNA:   3'- -CUGUCCCuaCUgCGU---------CGUCUUUaCGG- -5'
5330 5' -52 NC_001798.1 + 8054 0.69 0.934665
Target:  5'- --gGGGGggGGCGC-GCAGcuGAGUGCUc -3'
miRNA:   3'- cugUCCCuaCUGCGuCGUC--UUUACGG- -5'
5330 5' -52 NC_001798.1 + 145027 0.69 0.934665
Target:  5'- gGGCucGGGcUGGCGCuGGgGGAGGUGCUg -3'
miRNA:   3'- -CUGu-CCCuACUGCG-UCgUCUUUACGG- -5'
5330 5' -52 NC_001798.1 + 131974 0.69 0.934665
Target:  5'- gGACGGGGGacgucuccgGGcCGCGGCGGAGAcGaCCg -3'
miRNA:   3'- -CUGUCCCUa--------CU-GCGUCGUCUUUaC-GG- -5'
5330 5' -52 NC_001798.1 + 4771 0.68 0.93967
Target:  5'- cGACGGGGGcgcGGCGCccGCGGAc--GCCg -3'
miRNA:   3'- -CUGUCCCUa--CUGCGu-CGUCUuuaCGG- -5'
5330 5' -52 NC_001798.1 + 334 0.68 0.944422
Target:  5'- cGGCGGcGGcgGGCggGCGGCAGGGcaGCCc -3'
miRNA:   3'- -CUGUC-CCuaCUG--CGUCGUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 154672 0.68 0.944422
Target:  5'- cGGCGGcGGcgGGCggGCGGCAGGGcaGCCc -3'
miRNA:   3'- -CUGUC-CCuaCUG--CGUCGUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 115372 0.68 0.944422
Target:  5'- cGGCGGGGucgAUGGUGuCGGCAGAGGgcGCCu -3'
miRNA:   3'- -CUGUCCC---UACUGC-GUCGUCUUUa-CGG- -5'
5330 5' -52 NC_001798.1 + 46117 0.68 0.947598
Target:  5'- cGCGGGGAgacGACGgGGCGaccgagaggcacccGGAcgGCCg -3'
miRNA:   3'- cUGUCCCUa--CUGCgUCGU--------------CUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 127197 0.68 0.948922
Target:  5'- cGCGGGGGgagGGgcggcgccCGCGGgGGAGcgGCCg -3'
miRNA:   3'- cUGUCCCUa--CU--------GCGUCgUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 11799 0.68 0.948922
Target:  5'- cACGGGGAcGGCcgGGCAGAGccGCCc -3'
miRNA:   3'- cUGUCCCUaCUGcgUCGUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 130182 0.68 0.948922
Target:  5'- uGGCGGcGGccGGCGC-GCGGAGGcggGCCg -3'
miRNA:   3'- -CUGUC-CCuaCUGCGuCGUCUUUa--CGG- -5'
5330 5' -52 NC_001798.1 + 127260 0.68 0.952759
Target:  5'- cGCGGGGGcgGGCGCGggaaaaaagccgcGCGGggGcGCCc -3'
miRNA:   3'- cUGUCCCUa-CUGCGU-------------CGUCuuUaCGG- -5'
5330 5' -52 NC_001798.1 + 141698 0.68 0.953173
Target:  5'- --gGGGGAUG-CGCAGgGGGAGaGCg -3'
miRNA:   3'- cugUCCCUACuGCGUCgUCUUUaCGg -5'
5330 5' -52 NC_001798.1 + 109901 0.68 0.953173
Target:  5'- --aGGGGGUGGgGUGGgGGAAA-GCCg -3'
miRNA:   3'- cugUCCCUACUgCGUCgUCUUUaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.