Results 41 - 60 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5330 | 5' | -52 | NC_001798.1 | + | 6363 | 0.68 | 0.953173 |
Target: 5'- --aGGGGcgGGCGUGGCGGGcaGGUGUg -3' miRNA: 3'- cugUCCCuaCUGCGUCGUCU--UUACGg -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 3532 | 0.68 | 0.953173 |
Target: 5'- cGACAGGGA--GCGCGgggccguccGCGGGu-UGCCc -3' miRNA: 3'- -CUGUCCCUacUGCGU---------CGUCUuuACGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 127260 | 0.68 | 0.952759 |
Target: 5'- cGCGGGGGcgGGCGCGggaaaaaagccgcGCGGggGcGCCc -3' miRNA: 3'- cUGUCCCUa-CUGCGU-------------CGUCuuUaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 130182 | 0.68 | 0.948922 |
Target: 5'- uGGCGGcGGccGGCGC-GCGGAGGcggGCCg -3' miRNA: 3'- -CUGUC-CCuaCUGCGuCGUCUUUa--CGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 11799 | 0.68 | 0.948922 |
Target: 5'- cACGGGGAcGGCcgGGCAGAGccGCCc -3' miRNA: 3'- cUGUCCCUaCUGcgUCGUCUUuaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 127197 | 0.68 | 0.948922 |
Target: 5'- cGCGGGGGgagGGgcggcgccCGCGGgGGAGcgGCCg -3' miRNA: 3'- cUGUCCCUa--CU--------GCGUCgUCUUuaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 46117 | 0.68 | 0.947598 |
Target: 5'- cGCGGGGAgacGACGgGGCGaccgagaggcacccGGAcgGCCg -3' miRNA: 3'- cUGUCCCUa--CUGCgUCGU--------------CUUuaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 334 | 0.68 | 0.944422 |
Target: 5'- cGGCGGcGGcgGGCggGCGGCAGGGcaGCCc -3' miRNA: 3'- -CUGUC-CCuaCUG--CGUCGUCUUuaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 154672 | 0.68 | 0.944422 |
Target: 5'- cGGCGGcGGcgGGCggGCGGCAGGGcaGCCc -3' miRNA: 3'- -CUGUC-CCuaCUG--CGUCGUCUUuaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 115372 | 0.68 | 0.944422 |
Target: 5'- cGGCGGGGucgAUGGUGuCGGCAGAGGgcGCCu -3' miRNA: 3'- -CUGUCCC---UACUGC-GUCGUCUUUa-CGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 4771 | 0.68 | 0.93967 |
Target: 5'- cGACGGGGGcgcGGCGCccGCGGAc--GCCg -3' miRNA: 3'- -CUGUCCCUa--CUGCGu-CGUCUuuaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 131974 | 0.69 | 0.934665 |
Target: 5'- gGACGGGGGacgucuccgGGcCGCGGCGGAGAcGaCCg -3' miRNA: 3'- -CUGUCCCUa--------CU-GCGUCGUCUUUaC-GG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 8054 | 0.69 | 0.934665 |
Target: 5'- --gGGGGggGGCGC-GCAGcuGAGUGCUc -3' miRNA: 3'- cugUCCCuaCUGCGuCGUC--UUUACGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 145027 | 0.69 | 0.934665 |
Target: 5'- gGGCucGGGcUGGCGCuGGgGGAGGUGCUg -3' miRNA: 3'- -CUGu-CCCuACUGCG-UCgUCUUUACGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 118939 | 0.69 | 0.934665 |
Target: 5'- cGGCGGGGggGGgGCGucgggacucGCGGAGG-GCCg -3' miRNA: 3'- -CUGUCCCuaCUgCGU---------CGUCUUUaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 129923 | 0.69 | 0.929404 |
Target: 5'- cGCGGGGAccugcgcgUGGCcgGCGGCAGcGAgGCCg -3' miRNA: 3'- cUGUCCCU--------ACUG--CGUCGUCuUUaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 941 | 0.69 | 0.923887 |
Target: 5'- cGGCGGGGGgcaGGCgGCGGCAGGcgcggcgugcGggGCCu -3' miRNA: 3'- -CUGUCCCUa--CUG-CGUCGUCU----------UuaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 120062 | 0.69 | 0.923887 |
Target: 5'- --gAGGGAaggGGCGCGGCGGGAcgGg- -3' miRNA: 3'- cugUCCCUa--CUGCGUCGUCUUuaCgg -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 146889 | 0.69 | 0.923887 |
Target: 5'- aACAGGGAguccucgccgcUGugGCccuGGCGGAcg-GCCg -3' miRNA: 3'- cUGUCCCU-----------ACugCG---UCGUCUuuaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 6319 | 0.69 | 0.917523 |
Target: 5'- gGGCGGGGGUGggcacggGCGUAaguGCGGGugcAUGCCu -3' miRNA: 3'- -CUGUCCCUAC-------UGCGU---CGUCUu--UACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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