miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 5' -52 NC_001798.1 + 20674 0.73 0.735017
Target:  5'- cGCGGGGGaGGCGCGcgcgcgcuucGCGGAGGUGUCc -3'
miRNA:   3'- cUGUCCCUaCUGCGU----------CGUCUUUACGG- -5'
5330 5' -52 NC_001798.1 + 29871 0.77 0.526039
Target:  5'- --uGGGGAcuagaaacacggUGGCGCgcuGGCGGAAGUGCCg -3'
miRNA:   3'- cugUCCCU------------ACUGCG---UCGUCUUUACGG- -5'
5330 5' -52 NC_001798.1 + 30243 0.73 0.75508
Target:  5'- uGGCGGGGggGGgGCuGCGGgcGUGUCg -3'
miRNA:   3'- -CUGUCCCuaCUgCGuCGUCuuUACGG- -5'
5330 5' -52 NC_001798.1 + 40998 0.74 0.702154
Target:  5'- aACGGGGGUGugGCggggggguauuaaGGCAGGGgcagcucgcccccGUGCCu -3'
miRNA:   3'- cUGUCCCUACugCG-------------UCGUCUU-------------UACGG- -5'
5330 5' -52 NC_001798.1 + 41111 0.66 0.98392
Target:  5'- cGCGGccggcgccgccauguGGGUGGCgGCGGCGGAcugcuuUGCCg -3'
miRNA:   3'- cUGUC---------------CCUACUG-CGUCGUCUuu----ACGG- -5'
5330 5' -52 NC_001798.1 + 41398 0.67 0.967775
Target:  5'- gGACGGGcGGUGGCGCcGGCAuGuauuAUaGCCg -3'
miRNA:   3'- -CUGUCC-CUACUGCG-UCGU-Cuu--UA-CGG- -5'
5330 5' -52 NC_001798.1 + 41975 0.71 0.829886
Target:  5'- cGCGGGGAgggcgGACGCA-CGGAuGUGCg -3'
miRNA:   3'- cUGUCCCUa----CUGCGUcGUCUuUACGg -5'
5330 5' -52 NC_001798.1 + 42919 0.85 0.221169
Target:  5'- -cCAGGGGcUGGCGCggGGCGGGAAUGCCg -3'
miRNA:   3'- cuGUCCCU-ACUGCG--UCGUCUUUACGG- -5'
5330 5' -52 NC_001798.1 + 43156 0.68 0.957179
Target:  5'- aGCGGGG--GGCcCGGCGGGGcgGCCu -3'
miRNA:   3'- cUGUCCCuaCUGcGUCGUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 46117 0.68 0.947598
Target:  5'- cGCGGGGAgacGACGgGGCGaccgagaggcacccGGAcgGCCg -3'
miRNA:   3'- cUGUCCCUa--CUGCgUCGU--------------CUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 48428 0.73 0.735017
Target:  5'- -uCAGGGAgUGGCGCAGCuGcuucAUGCCc -3'
miRNA:   3'- cuGUCCCU-ACUGCGUCGuCuu--UACGG- -5'
5330 5' -52 NC_001798.1 + 52130 0.68 0.954804
Target:  5'- aGGCGGGGAUccacaaauaacucccGuCGCcgggcGGCGGAGggGCCg -3'
miRNA:   3'- -CUGUCCCUA---------------CuGCG-----UCGUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 52182 0.72 0.803027
Target:  5'- aGCGGcGGGUGGCGgGGCGcGGAuUGCCc -3'
miRNA:   3'- cUGUC-CCUACUGCgUCGU-CUUuACGG- -5'
5330 5' -52 NC_001798.1 + 52861 0.71 0.838465
Target:  5'- uGCGGGGGagggcUGAUGUAGCGGggGaGCg -3'
miRNA:   3'- cUGUCCCU-----ACUGCGUCGUCuuUaCGg -5'
5330 5' -52 NC_001798.1 + 57173 0.67 0.970852
Target:  5'- gGACGGGGA--GCGCGGCcccga-GCCa -3'
miRNA:   3'- -CUGUCCCUacUGCGUCGucuuuaCGG- -5'
5330 5' -52 NC_001798.1 + 65043 0.73 0.774678
Target:  5'- aGGCGGGGAUGuCGCGGUAGcucAGAU-CCu -3'
miRNA:   3'- -CUGUCCCUACuGCGUCGUC---UUUAcGG- -5'
5330 5' -52 NC_001798.1 + 68480 0.7 0.878197
Target:  5'- -cCGGGGGcgcgGGCGCaccGGCGgGGAAUGCCu -3'
miRNA:   3'- cuGUCCCUa---CUGCG---UCGU-CUUUACGG- -5'
5330 5' -52 NC_001798.1 + 68751 0.68 0.953173
Target:  5'- -cCGGGGcgcUGGCGCAGgGGGGugaGCCg -3'
miRNA:   3'- cuGUCCCu--ACUGCGUCgUCUUua-CGG- -5'
5330 5' -52 NC_001798.1 + 77518 0.68 0.957179
Target:  5'- uGCGGGcGcAUGGCGCccuGGCGGAcgcGGUGUCg -3'
miRNA:   3'- cUGUCC-C-UACUGCG---UCGUCU---UUACGG- -5'
5330 5' -52 NC_001798.1 + 80351 0.66 0.985037
Target:  5'- -cCGGGGGccgUGGCGcCGGCGGAccUGaCCg -3'
miRNA:   3'- cuGUCCCU---ACUGC-GUCGUCUuuAC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.