miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 5' -52 NC_001798.1 + 83340 0.67 0.967775
Target:  5'- uGGCGGGGGUGccCGC-GCGGAc--GCCc -3'
miRNA:   3'- -CUGUCCCUACu-GCGuCGUCUuuaCGG- -5'
5330 5' -52 NC_001798.1 + 87124 0.77 0.54656
Target:  5'- cGGCgAGGGcgGAUGCGGCAGGGcgguugGCCa -3'
miRNA:   3'- -CUG-UCCCuaCUGCGUCGUCUUua----CGG- -5'
5330 5' -52 NC_001798.1 + 93744 0.67 0.960579
Target:  5'- aGGgGGcGGAUGACGCGGaccggauggggguUAGGGggGCCg -3'
miRNA:   3'- -CUgUC-CCUACUGCGUC-------------GUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 95749 0.72 0.79373
Target:  5'- cGCGGGGggGGCGCGGaGGAAccccagGCCg -3'
miRNA:   3'- cUGUCCCuaCUGCGUCgUCUUua----CGG- -5'
5330 5' -52 NC_001798.1 + 98237 0.7 0.899271
Target:  5'- cGGCAGGGuggagcggaucGUGGCGguGCcGggGcGCCc -3'
miRNA:   3'- -CUGUCCC-----------UACUGCguCGuCuuUaCGG- -5'
5330 5' -52 NC_001798.1 + 98346 0.67 0.964475
Target:  5'- cGguGGGGUccCGCGGCGGggGcugguggcUGCCg -3'
miRNA:   3'- cUguCCCUAcuGCGUCGUCuuU--------ACGG- -5'
5330 5' -52 NC_001798.1 + 100364 0.7 0.905804
Target:  5'- -cCGGGGGgccgcGGCGCggucGGCGGGAGcUGCCg -3'
miRNA:   3'- cuGUCCCUa----CUGCG----UCGUCUUU-ACGG- -5'
5330 5' -52 NC_001798.1 + 102240 0.77 0.536265
Target:  5'- cGCAGGGAcGACGCGGCGGccgcgcgcGCCg -3'
miRNA:   3'- cUGUCCCUaCUGCGUCGUCuuua----CGG- -5'
5330 5' -52 NC_001798.1 + 104671 0.66 0.976363
Target:  5'- gGACGacGAUGACGCuccuGCGGAg--GCCg -3'
miRNA:   3'- -CUGUccCUACUGCGu---CGUCUuuaCGG- -5'
5330 5' -52 NC_001798.1 + 108268 0.7 0.878197
Target:  5'- aGCGGGGAcGGCGCcaacuGCGGAAaccgGUGCa -3'
miRNA:   3'- cUGUCCCUaCUGCGu----CGUCUU----UACGg -5'
5330 5' -52 NC_001798.1 + 109901 0.68 0.953173
Target:  5'- --aGGGGGUGGgGUGGgGGAAA-GCCg -3'
miRNA:   3'- cugUCCCUACUgCGUCgUCUUUaCGG- -5'
5330 5' -52 NC_001798.1 + 110472 0.66 0.981069
Target:  5'- uACAGGGG-GGCGguGCugccgcUGCCg -3'
miRNA:   3'- cUGUCCCUaCUGCguCGucuuu-ACGG- -5'
5330 5' -52 NC_001798.1 + 111528 0.66 0.985037
Target:  5'- gGGCAGGGGgguuuggaccGACGCGuccuGCAuGAGA-GCCg -3'
miRNA:   3'- -CUGUCCCUa---------CUGCGU----CGU-CUUUaCGG- -5'
5330 5' -52 NC_001798.1 + 113363 0.67 0.964475
Target:  5'- -cCGGGGAUGGC-CGGgAGGGAcacgGCCc -3'
miRNA:   3'- cuGUCCCUACUGcGUCgUCUUUa---CGG- -5'
5330 5' -52 NC_001798.1 + 114307 0.71 0.829017
Target:  5'- aGGCGGGGGUGcggaagcACGCGGUAGGGugggguguAUGCg -3'
miRNA:   3'- -CUGUCCCUAC-------UGCGUCGUCUU--------UACGg -5'
5330 5' -52 NC_001798.1 + 115297 0.66 0.978813
Target:  5'- -uCAGGGAcaGCGCcaucAGCGGAGGggggGCCu -3'
miRNA:   3'- cuGUCCCUacUGCG----UCGUCUUUa---CGG- -5'
5330 5' -52 NC_001798.1 + 115372 0.68 0.944422
Target:  5'- cGGCGGGGucgAUGGUGuCGGCAGAGGgcGCCu -3'
miRNA:   3'- -CUGUCCC---UACUGC-GUCGUCUUUa-CGG- -5'
5330 5' -52 NC_001798.1 + 115503 0.66 0.976363
Target:  5'- -cCAGGGGcUGuuCGCGGCGGGAAacgGCa -3'
miRNA:   3'- cuGUCCCU-ACu-GCGUCGUCUUUa--CGg -5'
5330 5' -52 NC_001798.1 + 116161 0.72 0.812158
Target:  5'- aAUAGGGAgu-UGCAGUAGAAGuauuUGCCg -3'
miRNA:   3'- cUGUCCCUacuGCGUCGUCUUU----ACGG- -5'
5330 5' -52 NC_001798.1 + 116447 0.66 0.983141
Target:  5'- uACGGGGGggcGACGUGGguGAuguccgggGCCc -3'
miRNA:   3'- cUGUCCCUa--CUGCGUCguCUuua-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.