Results 61 - 80 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5330 | 5' | -52 | NC_001798.1 | + | 117789 | 0.67 | 0.967455 |
Target: 5'- uGCAGGGAUGACGgagaugaUAGCGuGAuuGAcGCCc -3' miRNA: 3'- cUGUCCCUACUGC-------GUCGU-CU--UUaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 118148 | 0.66 | 0.981069 |
Target: 5'- gGGCGGGGgcG-CGCGGCGGccggGCg -3' miRNA: 3'- -CUGUCCCuaCuGCGUCGUCuuuaCGg -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 118190 | 0.66 | 0.981069 |
Target: 5'- gGGCGGGGgcG-CGCGGCGGccggGCg -3' miRNA: 3'- -CUGUCCCuaCuGCGUCGUCuuuaCGg -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 118232 | 0.66 | 0.981069 |
Target: 5'- gGGCGGGGgcG-CGCGGCGGccggGCg -3' miRNA: 3'- -CUGUCCCuaCuGCGUCGUCuuuaCGg -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 118462 | 0.75 | 0.650687 |
Target: 5'- cGGCGGGGGggggugccgugggUGugGCGGCGGGGcgcggGCCg -3' miRNA: 3'- -CUGUCCCU-------------ACugCGUCGUCUUua---CGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 118708 | 0.67 | 0.964475 |
Target: 5'- --gGGGGGUGGCgGCGGUGGucggcGUGCUg -3' miRNA: 3'- cugUCCCUACUG-CGUCGUCuu---UACGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 118939 | 0.69 | 0.934665 |
Target: 5'- cGGCGGGGggGGgGCGucgggacucGCGGAGG-GCCg -3' miRNA: 3'- -CUGUCCCuaCUgCGU---------CGUCUUUaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 119328 | 0.7 | 0.885463 |
Target: 5'- cGCGGGGGccuaAUGCGGCGGGAGgcguggGCCg -3' miRNA: 3'- cUGUCCCUac--UGCGUCGUCUUUa-----CGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 119504 | 1.12 | 0.004301 |
Target: 5'- aGACAGGGAUGACGCAGCAGAAAUGCCc -3' miRNA: 3'- -CUGUCCCUACUGCGUCGUCUUUACGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 120062 | 0.69 | 0.923887 |
Target: 5'- --gAGGGAaggGGCGCGGCGGGAcgGg- -3' miRNA: 3'- cugUCCCUa--CUGCGUCGUCUUuaCgg -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 122200 | 0.74 | 0.724837 |
Target: 5'- aGACGGGGA--ACGUGGCGGAccUGCUg -3' miRNA: 3'- -CUGUCCCUacUGCGUCGUCUuuACGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 123407 | 0.71 | 0.838465 |
Target: 5'- cGGCGGGGGgcgcgcgcaGGCGCGGCGGGuggGCg -3' miRNA: 3'- -CUGUCCCUa--------CUGCGUCGUCUuuaCGg -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 123598 | 0.7 | 0.870696 |
Target: 5'- cGCGGGGgcGGCGguGCGGggGcGaCCc -3' miRNA: 3'- cUGUCCCuaCUGCguCGUCuuUaC-GG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 126123 | 0.66 | 0.978813 |
Target: 5'- cGACGGGGGUccugGGCGCgcgAGCGG----GCCg -3' miRNA: 3'- -CUGUCCCUA----CUGCG---UCGUCuuuaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 127148 | 0.76 | 0.56733 |
Target: 5'- gGACGGGGAagggGGCGC-GCGGGGcUGCCc -3' miRNA: 3'- -CUGUCCCUa---CUGCGuCGUCUUuACGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 127197 | 0.68 | 0.948922 |
Target: 5'- cGCGGGGGgagGGgcggcgccCGCGGgGGAGcgGCCg -3' miRNA: 3'- cUGUCCCUa--CU--------GCGUCgUCUUuaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 127260 | 0.68 | 0.952759 |
Target: 5'- cGCGGGGGcgGGCGCGggaaaaaagccgcGCGGggGcGCCc -3' miRNA: 3'- cUGUCCCUa-CUGCGU-------------CGUCuuUaCGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 127528 | 0.7 | 0.870696 |
Target: 5'- -cCGGGGcggGGCGCGGgGGAGGcgGCCg -3' miRNA: 3'- cuGUCCCua-CUGCGUCgUCUUUa-CGG- -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 128243 | 0.66 | 0.981069 |
Target: 5'- cGCGGGGAcggugcUGGcCGCGGCGGGcgGcgGCg -3' miRNA: 3'- cUGUCCCU------ACU-GCGUCGUCU--UuaCGg -5' |
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5330 | 5' | -52 | NC_001798.1 | + | 129923 | 0.69 | 0.929404 |
Target: 5'- cGCGGGGAccugcgcgUGGCcgGCGGCAGcGAgGCCg -3' miRNA: 3'- cUGUCCCU--------ACUG--CGUCGUCuUUaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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