miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 5' -52 NC_001798.1 + 154672 0.68 0.944422
Target:  5'- cGGCGGcGGcgGGCggGCGGCAGGGcaGCCc -3'
miRNA:   3'- -CUGUC-CCuaCUG--CGUCGUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 154508 0.66 0.978813
Target:  5'- cGGCAGGacGggGAC-UAGCAGGcuGUGCCg -3'
miRNA:   3'- -CUGUCC--CuaCUGcGUCGUCUu-UACGG- -5'
5330 5' -52 NC_001798.1 + 152477 0.7 0.899271
Target:  5'- gGGCGGGGc-GGCGCAGCGcgcg-GCCa -3'
miRNA:   3'- -CUGUCCCuaCUGCGUCGUcuuuaCGG- -5'
5330 5' -52 NC_001798.1 + 152213 0.73 0.774678
Target:  5'- cGGCGGGGcggggGGCGCGGCccccgcgggaGGGGcgGCCg -3'
miRNA:   3'- -CUGUCCCua---CUGCGUCG----------UCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 152069 0.7 0.905804
Target:  5'- cGCGGaGGcgGGCGCGGCGagcGAGucgGCCg -3'
miRNA:   3'- cUGUC-CCuaCUGCGUCGU---CUUua-CGG- -5'
5330 5' -52 NC_001798.1 + 151786 0.72 0.812158
Target:  5'- aGGCGGGGcgcgucGGCGUgcGGCGGGGcgGCCg -3'
miRNA:   3'- -CUGUCCCua----CUGCG--UCGUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 151316 0.66 0.982538
Target:  5'- aGCAGGGGcgcguaGGCGCggcgcaggcuggucAGCAGGAA-GCCc -3'
miRNA:   3'- cUGUCCCUa-----CUGCG--------------UCGUCUUUaCGG- -5'
5330 5' -52 NC_001798.1 + 148492 0.66 0.978813
Target:  5'- gGACGGGGG-GACGgGcCGGggGgacggGCCg -3'
miRNA:   3'- -CUGUCCCUaCUGCgUcGUCuuUa----CGG- -5'
5330 5' -52 NC_001798.1 + 148231 0.66 0.978813
Target:  5'- gGACGGGGG-GACGgGGggaCGGggGgacggGCCg -3'
miRNA:   3'- -CUGUCCCUaCUGCgUC---GUCuuUa----CGG- -5'
5330 5' -52 NC_001798.1 + 146889 0.69 0.923887
Target:  5'- aACAGGGAguccucgccgcUGugGCccuGGCGGAcg-GCCg -3'
miRNA:   3'- cUGUCCCU-----------ACugCG---UCGUCUuuaCGG- -5'
5330 5' -52 NC_001798.1 + 145027 0.69 0.934665
Target:  5'- gGGCucGGGcUGGCGCuGGgGGAGGUGCUg -3'
miRNA:   3'- -CUGu-CCCuACUGCG-UCgUCUUUACGG- -5'
5330 5' -52 NC_001798.1 + 143572 0.66 0.985037
Target:  5'- cGAUGGGGgcGGUGgGGCGGGccUGCCg -3'
miRNA:   3'- -CUGUCCCuaCUGCgUCGUCUuuACGG- -5'
5330 5' -52 NC_001798.1 + 141698 0.68 0.953173
Target:  5'- --gGGGGAUG-CGCAGgGGGAGaGCg -3'
miRNA:   3'- cugUCCCUACuGCGUCgUCUUUaCGg -5'
5330 5' -52 NC_001798.1 + 139386 0.75 0.62633
Target:  5'- gGugAGGGGggaaucggccgugGGCGCGGCGGAGGcGCCc -3'
miRNA:   3'- -CugUCCCUa------------CUGCGUCGUCUUUaCGG- -5'
5330 5' -52 NC_001798.1 + 134976 0.69 0.912086
Target:  5'- cGCAGGGAUaggGGCagGCGGCGGGGAaGCg -3'
miRNA:   3'- cUGUCCCUA---CUG--CGUCGUCUUUaCGg -5'
5330 5' -52 NC_001798.1 + 132920 0.69 0.912086
Target:  5'- cGC-GGGAUGACGCgggccccgGGCAGGgcgccAGUGCUc -3'
miRNA:   3'- cUGuCCCUACUGCG--------UCGUCU-----UUACGG- -5'
5330 5' -52 NC_001798.1 + 132785 0.71 0.838465
Target:  5'- aGCGcGGGAUGACGCgggccccgGGCAGGgc-GCCa -3'
miRNA:   3'- cUGU-CCCUACUGCG--------UCGUCUuuaCGG- -5'
5330 5' -52 NC_001798.1 + 131974 0.69 0.934665
Target:  5'- gGACGGGGGacgucuccgGGcCGCGGCGGAGAcGaCCg -3'
miRNA:   3'- -CUGUCCCUa--------CU-GCGUCGUCUUUaC-GG- -5'
5330 5' -52 NC_001798.1 + 131210 0.73 0.764942
Target:  5'- cGGCGcGGAcGACGaggaGGCGGggGUGCCc -3'
miRNA:   3'- -CUGUcCCUaCUGCg---UCGUCuuUACGG- -5'
5330 5' -52 NC_001798.1 + 130182 0.68 0.948922
Target:  5'- uGGCGGcGGccGGCGC-GCGGAGGcggGCCg -3'
miRNA:   3'- -CUGUC-CCuaCUGCGuCGUCUUUa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.