miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 5' -52 NC_001798.1 + 129923 0.69 0.929404
Target:  5'- cGCGGGGAccugcgcgUGGCcgGCGGCAGcGAgGCCg -3'
miRNA:   3'- cUGUCCCU--------ACUG--CGUCGUCuUUaCGG- -5'
5330 5' -52 NC_001798.1 + 128243 0.66 0.981069
Target:  5'- cGCGGGGAcggugcUGGcCGCGGCGGGcgGcgGCg -3'
miRNA:   3'- cUGUCCCU------ACU-GCGUCGUCU--UuaCGg -5'
5330 5' -52 NC_001798.1 + 127528 0.7 0.870696
Target:  5'- -cCGGGGcggGGCGCGGgGGAGGcgGCCg -3'
miRNA:   3'- cuGUCCCua-CUGCGUCgUCUUUa-CGG- -5'
5330 5' -52 NC_001798.1 + 127260 0.68 0.952759
Target:  5'- cGCGGGGGcgGGCGCGggaaaaaagccgcGCGGggGcGCCc -3'
miRNA:   3'- cUGUCCCUa-CUGCGU-------------CGUCuuUaCGG- -5'
5330 5' -52 NC_001798.1 + 127197 0.68 0.948922
Target:  5'- cGCGGGGGgagGGgcggcgccCGCGGgGGAGcgGCCg -3'
miRNA:   3'- cUGUCCCUa--CU--------GCGUCgUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 127148 0.76 0.56733
Target:  5'- gGACGGGGAagggGGCGC-GCGGGGcUGCCc -3'
miRNA:   3'- -CUGUCCCUa---CUGCGuCGUCUUuACGG- -5'
5330 5' -52 NC_001798.1 + 126123 0.66 0.978813
Target:  5'- cGACGGGGGUccugGGCGCgcgAGCGG----GCCg -3'
miRNA:   3'- -CUGUCCCUA----CUGCG---UCGUCuuuaCGG- -5'
5330 5' -52 NC_001798.1 + 123598 0.7 0.870696
Target:  5'- cGCGGGGgcGGCGguGCGGggGcGaCCc -3'
miRNA:   3'- cUGUCCCuaCUGCguCGUCuuUaC-GG- -5'
5330 5' -52 NC_001798.1 + 123407 0.71 0.838465
Target:  5'- cGGCGGGGGgcgcgcgcaGGCGCGGCGGGuggGCg -3'
miRNA:   3'- -CUGUCCCUa--------CUGCGUCGUCUuuaCGg -5'
5330 5' -52 NC_001798.1 + 122200 0.74 0.724837
Target:  5'- aGACGGGGA--ACGUGGCGGAccUGCUg -3'
miRNA:   3'- -CUGUCCCUacUGCGUCGUCUuuACGG- -5'
5330 5' -52 NC_001798.1 + 120062 0.69 0.923887
Target:  5'- --gAGGGAaggGGCGCGGCGGGAcgGg- -3'
miRNA:   3'- cugUCCCUa--CUGCGUCGUCUUuaCgg -5'
5330 5' -52 NC_001798.1 + 119504 1.12 0.004301
Target:  5'- aGACAGGGAUGACGCAGCAGAAAUGCCc -3'
miRNA:   3'- -CUGUCCCUACUGCGUCGUCUUUACGG- -5'
5330 5' -52 NC_001798.1 + 119328 0.7 0.885463
Target:  5'- cGCGGGGGccuaAUGCGGCGGGAGgcguggGCCg -3'
miRNA:   3'- cUGUCCCUac--UGCGUCGUCUUUa-----CGG- -5'
5330 5' -52 NC_001798.1 + 118939 0.69 0.934665
Target:  5'- cGGCGGGGggGGgGCGucgggacucGCGGAGG-GCCg -3'
miRNA:   3'- -CUGUCCCuaCUgCGU---------CGUCUUUaCGG- -5'
5330 5' -52 NC_001798.1 + 118708 0.67 0.964475
Target:  5'- --gGGGGGUGGCgGCGGUGGucggcGUGCUg -3'
miRNA:   3'- cugUCCCUACUG-CGUCGUCuu---UACGG- -5'
5330 5' -52 NC_001798.1 + 118462 0.75 0.650687
Target:  5'- cGGCGGGGGggggugccgugggUGugGCGGCGGGGcgcggGCCg -3'
miRNA:   3'- -CUGUCCCU-------------ACugCGUCGUCUUua---CGG- -5'
5330 5' -52 NC_001798.1 + 118232 0.66 0.981069
Target:  5'- gGGCGGGGgcG-CGCGGCGGccggGCg -3'
miRNA:   3'- -CUGUCCCuaCuGCGUCGUCuuuaCGg -5'
5330 5' -52 NC_001798.1 + 118190 0.66 0.981069
Target:  5'- gGGCGGGGgcG-CGCGGCGGccggGCg -3'
miRNA:   3'- -CUGUCCCuaCuGCGUCGUCuuuaCGg -5'
5330 5' -52 NC_001798.1 + 118148 0.66 0.981069
Target:  5'- gGGCGGGGgcG-CGCGGCGGccggGCg -3'
miRNA:   3'- -CUGUCCCuaCuGCGUCGUCuuuaCGg -5'
5330 5' -52 NC_001798.1 + 117789 0.67 0.967455
Target:  5'- uGCAGGGAUGACGgagaugaUAGCGuGAuuGAcGCCc -3'
miRNA:   3'- cUGUCCCUACUGC-------GUCGU-CU--UUaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.