miRNA display CGI


Results 81 - 100 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5330 5' -52 NC_001798.1 + 130182 0.68 0.948922
Target:  5'- uGGCGGcGGccGGCGC-GCGGAGGcggGCCg -3'
miRNA:   3'- -CUGUC-CCuaCUGCGuCGUCUUUa--CGG- -5'
5330 5' -52 NC_001798.1 + 11799 0.68 0.948922
Target:  5'- cACGGGGAcGGCcgGGCAGAGccGCCc -3'
miRNA:   3'- cUGUCCCUaCUGcgUCGUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 127197 0.68 0.948922
Target:  5'- cGCGGGGGgagGGgcggcgccCGCGGgGGAGcgGCCg -3'
miRNA:   3'- cUGUCCCUa--CU--------GCGUCgUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 46117 0.68 0.947598
Target:  5'- cGCGGGGAgacGACGgGGCGaccgagaggcacccGGAcgGCCg -3'
miRNA:   3'- cUGUCCCUa--CUGCgUCGU--------------CUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 334 0.68 0.944422
Target:  5'- cGGCGGcGGcgGGCggGCGGCAGGGcaGCCc -3'
miRNA:   3'- -CUGUC-CCuaCUG--CGUCGUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 154672 0.68 0.944422
Target:  5'- cGGCGGcGGcgGGCggGCGGCAGGGcaGCCc -3'
miRNA:   3'- -CUGUC-CCuaCUG--CGUCGUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 6470 0.68 0.953173
Target:  5'- --aGGGGcgGGCGUGGCGGGcaGGUGUg -3'
miRNA:   3'- cugUCCCuaCUGCGUCGUCU--UUACGg -5'
5330 5' -52 NC_001798.1 + 6363 0.68 0.953173
Target:  5'- --aGGGGcgGGCGUGGCGGGcaGGUGUg -3'
miRNA:   3'- cugUCCCuaCUGCGUCGUCU--UUACGg -5'
5330 5' -52 NC_001798.1 + 3532 0.68 0.953173
Target:  5'- cGACAGGGA--GCGCGgggccguccGCGGGu-UGCCc -3'
miRNA:   3'- -CUGUCCCUacUGCGU---------CGUCUuuACGG- -5'
5330 5' -52 NC_001798.1 + 98346 0.67 0.964475
Target:  5'- cGguGGGGUccCGCGGCGGggGcugguggcUGCCg -3'
miRNA:   3'- cUguCCCUAcuGCGUCGUCuuU--------ACGG- -5'
5330 5' -52 NC_001798.1 + 113363 0.67 0.964475
Target:  5'- -cCGGGGAUGGC-CGGgAGGGAcacgGCCc -3'
miRNA:   3'- cuGUCCCUACUGcGUCgUCUUUa---CGG- -5'
5330 5' -52 NC_001798.1 + 8174 0.67 0.964475
Target:  5'- aGACGGGccGcgGGC-CAGCAGAcggGCCg -3'
miRNA:   3'- -CUGUCC--CuaCUGcGUCGUCUuuaCGG- -5'
5330 5' -52 NC_001798.1 + 118708 0.67 0.964475
Target:  5'- --gGGGGGUGGCgGCGGUGGucggcGUGCUg -3'
miRNA:   3'- cugUCCCUACUG-CGUCGUCuu---UACGG- -5'
5330 5' -52 NC_001798.1 + 1742 0.67 0.960945
Target:  5'- cGCGGGGcgGuCGCcggGGCGGAGuccggGCCc -3'
miRNA:   3'- cUGUCCCuaCuGCG---UCGUCUUua---CGG- -5'
5330 5' -52 NC_001798.1 + 93744 0.67 0.960579
Target:  5'- aGGgGGcGGAUGACGCGGaccggauggggguUAGGGggGCCg -3'
miRNA:   3'- -CUgUC-CCUACUGCGUC-------------GUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 5274 0.68 0.957179
Target:  5'- cGCGGGGGccgcGGCccGCAGCAGGuccGCCa -3'
miRNA:   3'- cUGUCCCUa---CUG--CGUCGUCUuuaCGG- -5'
5330 5' -52 NC_001798.1 + 43156 0.68 0.957179
Target:  5'- aGCGGGG--GGCcCGGCGGGGcgGCCu -3'
miRNA:   3'- cUGUCCCuaCUGcGUCGUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 77518 0.68 0.957179
Target:  5'- uGCGGGcGcAUGGCGCccuGGCGGAcgcGGUGUCg -3'
miRNA:   3'- cUGUCC-C-UACUGCG---UCGUCU---UUACGG- -5'
5330 5' -52 NC_001798.1 + 52130 0.68 0.954804
Target:  5'- aGGCGGGGAUccacaaauaacucccGuCGCcgggcGGCGGAGggGCCg -3'
miRNA:   3'- -CUGUCCCUA---------------CuGCG-----UCGUCUUuaCGG- -5'
5330 5' -52 NC_001798.1 + 115372 0.68 0.944422
Target:  5'- cGGCGGGGucgAUGGUGuCGGCAGAGGgcGCCu -3'
miRNA:   3'- -CUGUCCC---UACUGC-GUCGUCUUUa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.