miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5333 3' -55.4 NC_001798.1 + 74579 0.66 0.936812
Target:  5'- gGCUCGGGCCcGGUCguccccgcGCUCc-- -3'
miRNA:   3'- -CGGGCCCGGaCCAGaaaua---CGAGacc -5'
5333 3' -55.4 NC_001798.1 + 95286 0.66 0.922275
Target:  5'- uGCCCcaGGGCCgGGUUUgUGUGCgc-GGc -3'
miRNA:   3'- -CGGG--CCCGGaCCAGAaAUACGagaCC- -5'
5333 3' -55.4 NC_001798.1 + 27060 0.66 0.916629
Target:  5'- cGCCCGcGGgg-GGUCUggg-GCUCUGa -3'
miRNA:   3'- -CGGGC-CCggaCCAGAaauaCGAGACc -5'
5333 3' -55.4 NC_001798.1 + 115837 0.66 0.910744
Target:  5'- cGCCCgGGGCCUGGagCUcg--GCgUUGGc -3'
miRNA:   3'- -CGGG-CCCGGACCa-GAaauaCGaGACC- -5'
5333 3' -55.4 NC_001798.1 + 4092 0.66 0.910744
Target:  5'- gGUCCGGGCCgGGgcgggCUcg--GCcCUGGg -3'
miRNA:   3'- -CGGGCCCGGaCCa----GAaauaCGaGACC- -5'
5333 3' -55.4 NC_001798.1 + 17186 0.67 0.898268
Target:  5'- aCCUGGGCCU-GUCggaugAUGCgcgcgaUCUGGu -3'
miRNA:   3'- cGGGCCCGGAcCAGaaa--UACG------AGACC- -5'
5333 3' -55.4 NC_001798.1 + 33245 0.67 0.891681
Target:  5'- aGCCgGGGCCcGGcCUc---GUUCUGGc -3'
miRNA:   3'- -CGGgCCCGGaCCaGAaauaCGAGACC- -5'
5333 3' -55.4 NC_001798.1 + 125467 0.68 0.870569
Target:  5'- cGCCCGGGaCCacGGUCUggugGCgcuUGGg -3'
miRNA:   3'- -CGGGCCC-GGa-CCAGAaauaCGag-ACC- -5'
5333 3' -55.4 NC_001798.1 + 24875 0.68 0.863097
Target:  5'- cGCgCCGuGaGCCUGGUCgccgggGCcCUGGg -3'
miRNA:   3'- -CG-GGC-C-CGGACCAGaaaua-CGaGACC- -5'
5333 3' -55.4 NC_001798.1 + 79540 0.68 0.831187
Target:  5'- aCCCGGGgccCCUGGUgCUgcGUgaggccgucagcGCUCUGGa -3'
miRNA:   3'- cGGGCCC---GGACCA-GAaaUA------------CGAGACC- -5'
5333 3' -55.4 NC_001798.1 + 65850 0.69 0.822738
Target:  5'- gGCCCGGagggugGCCUGGUag-UGgugGC-CUGGg -3'
miRNA:   3'- -CGGGCC------CGGACCAgaaAUa--CGaGACC- -5'
5333 3' -55.4 NC_001798.1 + 45371 0.69 0.822738
Target:  5'- --gCGGGCCcuUGGUCUcuccaccUcgGCUCUGGc -3'
miRNA:   3'- cggGCCCGG--ACCAGAa------AuaCGAGACC- -5'
5333 3' -55.4 NC_001798.1 + 59799 0.7 0.739911
Target:  5'- aCCCGGGCCUGGcCcucgagGCcuucuucuUCUGGg -3'
miRNA:   3'- cGGGCCCGGACCaGaaaua-CG--------AGACC- -5'
5333 3' -55.4 NC_001798.1 + 4196 0.75 0.470152
Target:  5'- cGCCCGcGGCgUGGUCUgcg-GCgCUGGc -3'
miRNA:   3'- -CGGGC-CCGgACCAGAaauaCGaGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.