Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5335 | 5' | -56.9 | NC_001798.1 | + | 136587 | 0.66 | 0.908561 |
Target: 5'- aGG-CCACACaguCCGUgCGGGGgacggGcCCGGg -3' miRNA: 3'- -CCaGGUGUGgu-GGCA-GUCCUa----C-GGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 37163 | 0.66 | 0.908561 |
Target: 5'- --gCCGCGCCGCCuggCGGGccGCuCGGc -3' miRNA: 3'- ccaGGUGUGGUGGca-GUCCuaCG-GCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 5963 | 0.66 | 0.908561 |
Target: 5'- cGUCCcgguCGCCGCCGcacCAGGGgacaCCGGc -3' miRNA: 3'- cCAGGu---GUGGUGGCa--GUCCUac--GGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 52021 | 0.66 | 0.908561 |
Target: 5'- gGGUCCcuGCugUACUGgccCGGGGUGCgCGc -3' miRNA: 3'- -CCAGG--UGugGUGGCa--GUCCUACG-GCc -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 96910 | 0.66 | 0.902504 |
Target: 5'- --cCCACGCCGCCGggCugucGGAcGCCGc -3' miRNA: 3'- ccaGGUGUGGUGGCa-Gu---CCUaCGGCc -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 77402 | 0.66 | 0.902504 |
Target: 5'- gGGUCgGCgGCCGCCGaccugguagucCAGGcgcGCCGGg -3' miRNA: 3'- -CCAGgUG-UGGUGGCa----------GUCCua-CGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 73917 | 0.66 | 0.902504 |
Target: 5'- uGUCCGCggagGCCAUCGa-GGGAUGuCUGGu -3' miRNA: 3'- cCAGGUG----UGGUGGCagUCCUAC-GGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 19046 | 0.66 | 0.902504 |
Target: 5'- cGG-CUAUACCACC-UguGGGUgGUCGGg -3' miRNA: 3'- -CCaGGUGUGGUGGcAguCCUA-CGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 99953 | 0.67 | 0.861607 |
Target: 5'- cGcCCGCGCCACUG-CGGGAggcGCCc- -3' miRNA: 3'- cCaGGUGUGGUGGCaGUCCUa--CGGcc -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 86122 | 0.67 | 0.861607 |
Target: 5'- --gCCGCGCCGCgGUCAGcGAgucCUGGg -3' miRNA: 3'- ccaGGUGUGGUGgCAGUC-CUac-GGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 58308 | 0.67 | 0.861607 |
Target: 5'- gGGUCUgACACagcuCCGUCAGGcccGCCGc -3' miRNA: 3'- -CCAGG-UGUGgu--GGCAGUCCua-CGGCc -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 60547 | 0.67 | 0.85407 |
Target: 5'- -cUCCAC-CCGCCGcaggUCAGGGUaCUGGu -3' miRNA: 3'- ccAGGUGuGGUGGC----AGUCCUAcGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 16218 | 0.67 | 0.85407 |
Target: 5'- ---aCGCGCCGCCuGUgGGGGggcggugggGCCGGg -3' miRNA: 3'- ccagGUGUGGUGG-CAgUCCUa--------CGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 17216 | 0.67 | 0.868946 |
Target: 5'- uGGUugUCGCACgGCCGccuuUCGGGGUcGCgCGGg -3' miRNA: 3'- -CCA--GGUGUGgUGGC----AGUCCUA-CG-GCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 34817 | 0.67 | 0.868946 |
Target: 5'- gGGgcccCCGCGCU-CCGcCGGGGgcccggGCCGGa -3' miRNA: 3'- -CCa---GGUGUGGuGGCaGUCCUa-----CGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 77460 | 0.67 | 0.868946 |
Target: 5'- gGGaCCAUGCCGCCcUCAucGAUGCCGcGg -3' miRNA: 3'- -CCaGGUGUGGUGGcAGUc-CUACGGC-C- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 43161 | 0.67 | 0.874671 |
Target: 5'- cGUcCCGCGCCGCCG-CGGcaaacgccugGCCGGu -3' miRNA: 3'- cCA-GGUGUGGUGGCaGUCcua-------CGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 137800 | 0.67 | 0.876082 |
Target: 5'- aGGUCCugGCCguaCG-CGGGGauguacuggUGCUGGa -3' miRNA: 3'- -CCAGGugUGGug-GCaGUCCU---------ACGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 31671 | 0.67 | 0.876082 |
Target: 5'- gGGcCCGCGCCGCC--CGccGUGCCGGu -3' miRNA: 3'- -CCaGGUGUGGUGGcaGUccUACGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 31471 | 0.67 | 0.846342 |
Target: 5'- -cUCCGCGCCGCCccgCGGGcc-CCGGg -3' miRNA: 3'- ccAGGUGUGGUGGca-GUCCuacGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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