miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5335 5' -56.9 NC_001798.1 + 43161 0.67 0.874671
Target:  5'- cGUcCCGCGCCGCCG-CGGcaaacgccugGCCGGu -3'
miRNA:   3'- cCA-GGUGUGGUGGCaGUCcua-------CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 77460 0.67 0.868946
Target:  5'- gGGaCCAUGCCGCCcUCAucGAUGCCGcGg -3'
miRNA:   3'- -CCaGGUGUGGUGGcAGUc-CUACGGC-C- -5'
5335 5' -56.9 NC_001798.1 + 34817 0.67 0.868946
Target:  5'- gGGgcccCCGCGCU-CCGcCGGGGgcccggGCCGGa -3'
miRNA:   3'- -CCa---GGUGUGGuGGCaGUCCUa-----CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 113638 0.68 0.805054
Target:  5'- cGGcCgGCGCCGCCaUguGGGUGgCGGc -3'
miRNA:   3'- -CCaGgUGUGGUGGcAguCCUACgGCC- -5'
5335 5' -56.9 NC_001798.1 + 3884 0.68 0.805054
Target:  5'- ---aCGCGCC-CCGggggCGGGggGCCGGc -3'
miRNA:   3'- ccagGUGUGGuGGCa---GUCCuaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 85981 0.68 0.805054
Target:  5'- aGUUCGagGCCGCCGcCGGGgcGCUGGc -3'
miRNA:   3'- cCAGGUg-UGGUGGCaGUCCuaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 145904 0.68 0.802448
Target:  5'- --gCCGCGCCccACCGgCGGGAUcgcggcgagacgcaGCCGGg -3'
miRNA:   3'- ccaGGUGUGG--UGGCaGUCCUA--------------CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 90985 0.68 0.799829
Target:  5'- uGGUCCGCACCGCCccaCAGGcgcaagcgacgcgGCCa- -3'
miRNA:   3'- -CCAGGUGUGGUGGca-GUCCua-----------CGGcc -5'
5335 5' -56.9 NC_001798.1 + 42294 0.68 0.796317
Target:  5'- cGG-CCGCACgcggaGCCGUCGGG--GCCGa -3'
miRNA:   3'- -CCaGGUGUGg----UGGCAGUCCuaCGGCc -5'
5335 5' -56.9 NC_001798.1 + 135201 0.68 0.796317
Target:  5'- -cUCCugGCCGCCcUCgcgggccucgGGGAgGCCGGg -3'
miRNA:   3'- ccAGGugUGGUGGcAG----------UCCUaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 24663 0.68 0.813641
Target:  5'- --aCCugGCgGCCGUgcCGGGGcugGCCGGa -3'
miRNA:   3'- ccaGGugUGgUGGCA--GUCCUa--CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 42464 0.68 0.813641
Target:  5'- --cCCACGC-AUCGUCAGGGaGCCGu -3'
miRNA:   3'- ccaGGUGUGgUGGCAGUCCUaCGGCc -5'
5335 5' -56.9 NC_001798.1 + 83239 0.68 0.821235
Target:  5'- cGG-CCGCGgagggacCCGCCGaggacucaCGGGGUGCUGGg -3'
miRNA:   3'- -CCaGGUGU-------GGUGGCa-------GUCCUACGGCC- -5'
5335 5' -56.9 NC_001798.1 + 25497 0.68 0.822071
Target:  5'- gGGcCCGCugCGCCG-CGcGGcgGCCuGGa -3'
miRNA:   3'- -CCaGGUGugGUGGCaGU-CCuaCGG-CC- -5'
5335 5' -56.9 NC_001798.1 + 72737 0.68 0.822071
Target:  5'- -aUCCACGCCAgggCGUCAaaguuGAUGUCGGg -3'
miRNA:   3'- ccAGGUGUGGUg--GCAGUc----CUACGGCC- -5'
5335 5' -56.9 NC_001798.1 + 152255 0.68 0.829517
Target:  5'- gGGUCCGC-CCgggagcucguGCCGggcCGGGGUuccaugaGCCGGg -3'
miRNA:   3'- -CCAGGUGuGG----------UGGCa--GUCCUA-------CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 95276 0.68 0.830335
Target:  5'- uGUCCugGCCugCccCAGG--GCCGGg -3'
miRNA:   3'- cCAGGugUGGugGcaGUCCuaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 2587 0.68 0.830335
Target:  5'- cGUCCGCGCgGCUcuucuUCGGGggGCgCGGg -3'
miRNA:   3'- cCAGGUGUGgUGGc----AGUCCuaCG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 60057 0.68 0.838428
Target:  5'- gGGUCCcC-CCGCCGacCuGGAgccGCCGGa -3'
miRNA:   3'- -CCAGGuGuGGUGGCa-GuCCUa--CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 79971 0.68 0.838428
Target:  5'- cGGcgCCGCGuCCGCCGcCGGGcccCCGGg -3'
miRNA:   3'- -CCa-GGUGU-GGUGGCaGUCCuacGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.