Results 61 - 80 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5335 | 5' | -56.9 | NC_001798.1 | + | 8071 | 0.69 | 0.741217 |
Target: 5'- cGGUCCugACCAcgucCCGgggaCAGGGUgGuuGGu -3' miRNA: 3'- -CCAGGugUGGU----GGCa---GUCCUA-CggCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 39537 | 0.69 | 0.741217 |
Target: 5'- --gCCGCGCCucGCCGUgGGuGgcGCCGGg -3' miRNA: 3'- ccaGGUGUGG--UGGCAgUC-CuaCGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 86877 | 0.69 | 0.742167 |
Target: 5'- cGGUCgCGCuuuuCCGCCGcCGGGAaccccggcguggagcGCCGGg -3' miRNA: 3'- -CCAG-GUGu---GGUGGCaGUCCUa--------------CGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 39571 | 0.69 | 0.750678 |
Target: 5'- cGUCCGCGCCGaCG-CGGGGUGgCGa -3' miRNA: 3'- cCAGGUGUGGUgGCaGUCCUACgGCc -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 14865 | 0.69 | 0.760039 |
Target: 5'- ----aACGCCGCCGUguGGAUGgUGGu -3' miRNA: 3'- ccaggUGUGGUGGCAguCCUACgGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 134788 | 0.69 | 0.769292 |
Target: 5'- cGGUCCACGCCGCCccc-GGA-GCCc- -3' miRNA: 3'- -CCAGGUGUGGUGGcaguCCUaCGGcc -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 84196 | 0.69 | 0.778428 |
Target: 5'- uGGUCUGCuCCGCCGUgaucgcgcccccCGGGgcGCCGu -3' miRNA: 3'- -CCAGGUGuGGUGGCA------------GUCCuaCGGCc -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 35530 | 0.69 | 0.778428 |
Target: 5'- -cUCCGcCGCgGCCGgcgCGGGGcguUGCCGGc -3' miRNA: 3'- ccAGGU-GUGgUGGCa--GUCCU---ACGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 102520 | 0.69 | 0.778428 |
Target: 5'- uGUCCGuagGCCACCGUCcccGcgGCCGGc -3' miRNA: 3'- cCAGGUg--UGGUGGCAGuc-CuaCGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 70951 | 0.69 | 0.78475 |
Target: 5'- uGGUCC-CGCCGCCGcugcuggcccaguuUCAGcacacGGUGCgGGa -3' miRNA: 3'- -CCAGGuGUGGUGGC--------------AGUC-----CUACGgCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 37390 | 0.7 | 0.702551 |
Target: 5'- uGUCCGaccgaGCCACCGggCGGGuccgugggGCCGGc -3' miRNA: 3'- cCAGGUg----UGGUGGCa-GUCCua------CGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 64004 | 0.7 | 0.702551 |
Target: 5'- cGGUCUccaGCCAgCGguUCAGGAUGCUGa -3' miRNA: 3'- -CCAGGug-UGGUgGC--AGUCCUACGGCc -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 27924 | 0.7 | 0.712324 |
Target: 5'- gGGUCCcCGCCGCCGgggUCccGgcGCCGGc -3' miRNA: 3'- -CCAGGuGUGGUGGC---AGucCuaCGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 132123 | 0.7 | 0.722031 |
Target: 5'- aGGUCCugcaggcggccCugCGCCGcCGGGG-GCCGGc -3' miRNA: 3'- -CCAGGu----------GugGUGGCaGUCCUaCGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 93270 | 0.7 | 0.722031 |
Target: 5'- cGGcCCGCGCCggcGCCGUCGGGgcGUaccUGGc -3' miRNA: 3'- -CCaGGUGUGG---UGGCAGUCCuaCG---GCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 117566 | 0.71 | 0.686801 |
Target: 5'- aGGUgCCGCggcgcgccggcauggACCACgGgCAGGAUGCCGu -3' miRNA: 3'- -CCA-GGUG---------------UGGUGgCaGUCCUACGGCc -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 90378 | 0.71 | 0.672927 |
Target: 5'- aGGuUCCGaa-CGCCGUCGGGggGCgCGGu -3' miRNA: 3'- -CC-AGGUgugGUGGCAGUCCuaCG-GCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 33437 | 0.71 | 0.672927 |
Target: 5'- gGGgucagCCGCACCACCGgcgcgaagcCAGGG-GCCaGGg -3' miRNA: 3'- -CCa----GGUGUGGUGGCa--------GUCCUaCGG-CC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 54385 | 0.71 | 0.662978 |
Target: 5'- gGGgggCCGCGgCGCgGUCggcGGGAgcUGCCGGg -3' miRNA: 3'- -CCa--GGUGUgGUGgCAG---UCCU--ACGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 69575 | 0.71 | 0.643017 |
Target: 5'- cGGcCCACGCCAUCG--GGGcUGUCGGg -3' miRNA: 3'- -CCaGGUGUGGUGGCagUCCuACGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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