Results 81 - 87 of 87 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 5335 | 5' | -56.9 | NC_001798.1 | + | 28807 | 0.72 | 0.613031 |
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Target: 5'- gGGUCCucCGCCGCCG-CGGGc--CCGGg -3' miRNA: 3'- -CCAGGu-GUGGUGGCaGUCCuacGGCC- -5' |
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| 5335 | 5' | -56.9 | NC_001798.1 | + | 150355 | 0.72 | 0.603054 |
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Target: 5'- cGGUgCGCGuCCACCGgcacggCGGGcgGCgCGGg -3' miRNA: 3'- -CCAgGUGU-GGUGGCa-----GUCCuaCG-GCC- -5' |
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| 5335 | 5' | -56.9 | NC_001798.1 | + | 106168 | 0.72 | 0.593098 |
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Target: 5'- -aUCCGCACgGCCG-CGGuGAuguUGCCGGa -3' miRNA: 3'- ccAGGUGUGgUGGCaGUC-CU---ACGGCC- -5' |
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| 5335 | 5' | -56.9 | NC_001798.1 | + | 58682 | 0.73 | 0.563416 |
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Target: 5'- --aCCAcCGCCGCCGUCAGGGccgcggcgGCgCGGg -3' miRNA: 3'- ccaGGU-GUGGUGGCAGUCCUa-------CG-GCC- -5' |
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| 5335 | 5' | -56.9 | NC_001798.1 | + | 41451 | 0.73 | 0.524505 |
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Target: 5'- gGGUCCAUGCC-CCGcCGGGGggggcgGUCGGc -3' miRNA: 3'- -CCAGGUGUGGuGGCaGUCCUa-----CGGCC- -5' |
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| 5335 | 5' | -56.9 | NC_001798.1 | + | 69843 | 0.75 | 0.459146 |
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Target: 5'- uGGUCCGgGCCGCCGUC-GGccGCCc- -3' miRNA: 3'- -CCAGGUgUGGUGGCAGuCCuaCGGcc -5' |
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| 5335 | 5' | -56.9 | NC_001798.1 | + | 17079 | 0.76 | 0.366048 |
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Target: 5'- gGGUCCACGCCG--GUCGGGuccacGCCGGa -3' miRNA: 3'- -CCAGGUGUGGUggCAGUCCua---CGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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