miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5335 5' -56.9 NC_001798.1 + 8071 0.69 0.741217
Target:  5'- cGGUCCugACCAcgucCCGgggaCAGGGUgGuuGGu -3'
miRNA:   3'- -CCAGGugUGGU----GGCa---GUCCUA-CggCC- -5'
5335 5' -56.9 NC_001798.1 + 84196 0.69 0.778428
Target:  5'- uGGUCUGCuCCGCCGUgaucgcgcccccCGGGgcGCCGu -3'
miRNA:   3'- -CCAGGUGuGGUGGCA------------GUCCuaCGGCc -5'
5335 5' -56.9 NC_001798.1 + 39537 0.69 0.741217
Target:  5'- --gCCGCGCCucGCCGUgGGuGgcGCCGGg -3'
miRNA:   3'- ccaGGUGUGG--UGGCAgUC-CuaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 39571 0.69 0.750678
Target:  5'- cGUCCGCGCCGaCG-CGGGGUGgCGa -3'
miRNA:   3'- cCAGGUGUGGUgGCaGUCCUACgGCc -5'
5335 5' -56.9 NC_001798.1 + 35530 0.69 0.778428
Target:  5'- -cUCCGcCGCgGCCGgcgCGGGGcguUGCCGGc -3'
miRNA:   3'- ccAGGU-GUGgUGGCa--GUCCU---ACGGCC- -5'
5335 5' -56.9 NC_001798.1 + 14865 0.69 0.760039
Target:  5'- ----aACGCCGCCGUguGGAUGgUGGu -3'
miRNA:   3'- ccaggUGUGGUGGCAguCCUACgGCC- -5'
5335 5' -56.9 NC_001798.1 + 86877 0.69 0.742167
Target:  5'- cGGUCgCGCuuuuCCGCCGcCGGGAaccccggcguggagcGCCGGg -3'
miRNA:   3'- -CCAG-GUGu---GGUGGCaGUCCUa--------------CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 42294 0.68 0.796317
Target:  5'- cGG-CCGCACgcggaGCCGUCGGG--GCCGa -3'
miRNA:   3'- -CCaGGUGUGg----UGGCAGUCCuaCGGCc -5'
5335 5' -56.9 NC_001798.1 + 2587 0.68 0.830335
Target:  5'- cGUCCGCGCgGCUcuucuUCGGGggGCgCGGg -3'
miRNA:   3'- cCAGGUGUGgUGGc----AGUCCuaCG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 83239 0.68 0.821235
Target:  5'- cGG-CCGCGgagggacCCGCCGaggacucaCGGGGUGCUGGg -3'
miRNA:   3'- -CCaGGUGU-------GGUGGCa-------GUCCUACGGCC- -5'
5335 5' -56.9 NC_001798.1 + 60057 0.68 0.838428
Target:  5'- gGGUCCcC-CCGCCGacCuGGAgccGCCGGa -3'
miRNA:   3'- -CCAGGuGuGGUGGCa-GuCCUa--CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 42464 0.68 0.813641
Target:  5'- --cCCACGC-AUCGUCAGGGaGCCGu -3'
miRNA:   3'- ccaGGUGUGgUGGCAGUCCUaCGGCc -5'
5335 5' -56.9 NC_001798.1 + 3884 0.68 0.805054
Target:  5'- ---aCGCGCC-CCGggggCGGGggGCCGGc -3'
miRNA:   3'- ccagGUGUGGuGGCa---GUCCuaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 135201 0.68 0.796317
Target:  5'- -cUCCugGCCGCCcUCgcgggccucgGGGAgGCCGGg -3'
miRNA:   3'- ccAGGugUGGUGGcAG----------UCCUaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 95276 0.68 0.830335
Target:  5'- uGUCCugGCCugCccCAGG--GCCGGg -3'
miRNA:   3'- cCAGGugUGGugGcaGUCCuaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 72737 0.68 0.822071
Target:  5'- -aUCCACGCCAgggCGUCAaaguuGAUGUCGGg -3'
miRNA:   3'- ccAGGUGUGGUg--GCAGUc----CUACGGCC- -5'
5335 5' -56.9 NC_001798.1 + 25497 0.68 0.822071
Target:  5'- gGGcCCGCugCGCCG-CGcGGcgGCCuGGa -3'
miRNA:   3'- -CCaGGUGugGUGGCaGU-CCuaCGG-CC- -5'
5335 5' -56.9 NC_001798.1 + 24663 0.68 0.813641
Target:  5'- --aCCugGCgGCCGUgcCGGGGcugGCCGGa -3'
miRNA:   3'- ccaGGugUGgUGGCA--GUCCUa--CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 113638 0.68 0.805054
Target:  5'- cGGcCgGCGCCGCCaUguGGGUGgCGGc -3'
miRNA:   3'- -CCaGgUGUGGUGGcAguCCUACgGCC- -5'
5335 5' -56.9 NC_001798.1 + 145904 0.68 0.802448
Target:  5'- --gCCGCGCCccACCGgCGGGAUcgcggcgagacgcaGCCGGg -3'
miRNA:   3'- ccaGGUGUGG--UGGCaGUCCUA--------------CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.