miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5335 5' -56.9 NC_001798.1 + 58308 0.67 0.861607
Target:  5'- gGGUCUgACACagcuCCGUCAGGcccGCCGc -3'
miRNA:   3'- -CCAGG-UGUGgu--GGCAGUCCua-CGGCc -5'
5335 5' -56.9 NC_001798.1 + 58682 0.73 0.563416
Target:  5'- --aCCAcCGCCGCCGUCAGGGccgcggcgGCgCGGg -3'
miRNA:   3'- ccaGGU-GUGGUGGCAGUCCUa-------CG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 60057 0.68 0.838428
Target:  5'- gGGUCCcC-CCGCCGacCuGGAgccGCCGGa -3'
miRNA:   3'- -CCAGGuGuGGUGGCa-GuCCUa--CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 60547 0.67 0.85407
Target:  5'- -cUCCAC-CCGCCGcaggUCAGGGUaCUGGu -3'
miRNA:   3'- ccAGGUGuGGUGGC----AGUCCUAcGGCC- -5'
5335 5' -56.9 NC_001798.1 + 64004 0.7 0.702551
Target:  5'- cGGUCUccaGCCAgCGguUCAGGAUGCUGa -3'
miRNA:   3'- -CCAGGug-UGGUgGC--AGUCCUACGGCc -5'
5335 5' -56.9 NC_001798.1 + 69575 0.71 0.643017
Target:  5'- cGGcCCACGCCAUCG--GGGcUGUCGGg -3'
miRNA:   3'- -CCaGGUGUGGUGGCagUCCuACGGCC- -5'
5335 5' -56.9 NC_001798.1 + 69843 0.75 0.459146
Target:  5'- uGGUCCGgGCCGCCGUC-GGccGCCc- -3'
miRNA:   3'- -CCAGGUgUGGUGGCAGuCCuaCGGcc -5'
5335 5' -56.9 NC_001798.1 + 70951 0.69 0.78475
Target:  5'- uGGUCC-CGCCGCCGcugcuggcccaguuUCAGcacacGGUGCgGGa -3'
miRNA:   3'- -CCAGGuGUGGUGGC--------------AGUC-----CUACGgCC- -5'
5335 5' -56.9 NC_001798.1 + 72737 0.68 0.822071
Target:  5'- -aUCCACGCCAgggCGUCAaaguuGAUGUCGGg -3'
miRNA:   3'- ccAGGUGUGGUg--GCAGUc----CUACGGCC- -5'
5335 5' -56.9 NC_001798.1 + 73917 0.66 0.902504
Target:  5'- uGUCCGCggagGCCAUCGa-GGGAUGuCUGGu -3'
miRNA:   3'- cCAGGUG----UGGUGGCagUCCUAC-GGCC- -5'
5335 5' -56.9 NC_001798.1 + 77402 0.66 0.902504
Target:  5'- gGGUCgGCgGCCGCCGaccugguagucCAGGcgcGCCGGg -3'
miRNA:   3'- -CCAGgUG-UGGUGGCa----------GUCCua-CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 77460 0.67 0.868946
Target:  5'- gGGaCCAUGCCGCCcUCAucGAUGCCGcGg -3'
miRNA:   3'- -CCaGGUGUGGUGGcAGUc-CUACGGC-C- -5'
5335 5' -56.9 NC_001798.1 + 79971 0.68 0.838428
Target:  5'- cGGcgCCGCGuCCGCCGcCGGGcccCCGGg -3'
miRNA:   3'- -CCa-GGUGU-GGUGGCaGUCCuacGGCC- -5'
5335 5' -56.9 NC_001798.1 + 83239 0.68 0.821235
Target:  5'- cGG-CCGCGgagggacCCGCCGaggacucaCGGGGUGCUGGg -3'
miRNA:   3'- -CCaGGUGU-------GGUGGCa-------GUCCUACGGCC- -5'
5335 5' -56.9 NC_001798.1 + 84196 0.69 0.778428
Target:  5'- uGGUCUGCuCCGCCGUgaucgcgcccccCGGGgcGCCGu -3'
miRNA:   3'- -CCAGGUGuGGUGGCA------------GUCCuaCGGCc -5'
5335 5' -56.9 NC_001798.1 + 85654 0.66 0.889725
Target:  5'- -cUCCACugCugcuuccggACCGacggCGGGGUGcCCGGg -3'
miRNA:   3'- ccAGGUGugG---------UGGCa---GUCCUAC-GGCC- -5'
5335 5' -56.9 NC_001798.1 + 85981 0.68 0.805054
Target:  5'- aGUUCGagGCCGCCGcCGGGgcGCUGGc -3'
miRNA:   3'- cCAGGUg-UGGUGGCaGUCCuaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 86122 0.67 0.861607
Target:  5'- --gCCGCGCCGCgGUCAGcGAgucCUGGg -3'
miRNA:   3'- ccaGGUGUGGUGgCAGUC-CUac-GGCC- -5'
5335 5' -56.9 NC_001798.1 + 86877 0.69 0.742167
Target:  5'- cGGUCgCGCuuuuCCGCCGcCGGGAaccccggcguggagcGCCGGg -3'
miRNA:   3'- -CCAG-GUGu---GGUGGCaGUCCUa--------------CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 88139 0.66 0.896225
Target:  5'- gGGUCUGgGCCACgaucaCGUaCGGGAU-CCGGu -3'
miRNA:   3'- -CCAGGUgUGGUG-----GCA-GUCCUAcGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.