miRNA display CGI


Results 61 - 80 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5335 5' -56.9 NC_001798.1 + 90378 0.71 0.672927
Target:  5'- aGGuUCCGaa-CGCCGUCGGGggGCgCGGu -3'
miRNA:   3'- -CC-AGGUgugGUGGCAGUCCuaCG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 90985 0.68 0.799829
Target:  5'- uGGUCCGCACCGCCccaCAGGcgcaagcgacgcgGCCa- -3'
miRNA:   3'- -CCAGGUGUGGUGGca-GUCCua-----------CGGcc -5'
5335 5' -56.9 NC_001798.1 + 93270 0.7 0.722031
Target:  5'- cGGcCCGCGCCggcGCCGUCGGGgcGUaccUGGc -3'
miRNA:   3'- -CCaGGUGUGG---UGGCAGUCCuaCG---GCC- -5'
5335 5' -56.9 NC_001798.1 + 95276 0.68 0.830335
Target:  5'- uGUCCugGCCugCccCAGG--GCCGGg -3'
miRNA:   3'- cCAGGugUGGugGcaGUCCuaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 96910 0.66 0.902504
Target:  5'- --cCCACGCCGCCGggCugucGGAcGCCGc -3'
miRNA:   3'- ccaGGUGUGGUGGCa-Gu---CCUaCGGCc -5'
5335 5' -56.9 NC_001798.1 + 99318 0.66 0.913245
Target:  5'- cGGUCaACugCAUCGUCgAGGAgguggacgcgcgGUCGGu -3'
miRNA:   3'- -CCAGgUGugGUGGCAG-UCCUa-----------CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 99953 0.67 0.861607
Target:  5'- cGcCCGCGCCACUG-CGGGAggcGCCc- -3'
miRNA:   3'- cCaGGUGUGGUGGCaGUCCUa--CGGcc -5'
5335 5' -56.9 NC_001798.1 + 102520 0.69 0.778428
Target:  5'- uGUCCGuagGCCACCGUCcccGcgGCCGGc -3'
miRNA:   3'- cCAGGUg--UGGUGGCAGuc-CuaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 105450 0.66 0.889725
Target:  5'- cGcCCGCuccGCCGCCGUCucccggGGGAUGuuGa -3'
miRNA:   3'- cCaGGUG---UGGUGGCAG------UCCUACggCc -5'
5335 5' -56.9 NC_001798.1 + 105719 0.66 0.889725
Target:  5'- cGGUCgACACCcaggggcuGuuGUCGGGugggugucGCCGGc -3'
miRNA:   3'- -CCAGgUGUGG--------UggCAGUCCua------CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 106168 0.72 0.593098
Target:  5'- -aUCCGCACgGCCG-CGGuGAuguUGCCGGa -3'
miRNA:   3'- ccAGGUGUGgUGGCaGUC-CU---ACGGCC- -5'
5335 5' -56.9 NC_001798.1 + 106728 0.67 0.876082
Target:  5'- cGUCCuaGCCAUCGcCAGGggGCCu- -3'
miRNA:   3'- cCAGGugUGGUGGCaGUCCuaCGGcc -5'
5335 5' -56.9 NC_001798.1 + 111760 0.66 0.914393
Target:  5'- cGGUCCcgGCCAUCGguuGGggGCgCGGg -3'
miRNA:   3'- -CCAGGugUGGUGGCaguCCuaCG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 113638 0.68 0.805054
Target:  5'- cGGcCgGCGCCGCCaUguGGGUGgCGGc -3'
miRNA:   3'- -CCaGgUGUGGUGGcAguCCUACgGCC- -5'
5335 5' -56.9 NC_001798.1 + 117368 0.67 0.846342
Target:  5'- uGGgCUACACCGCCGUCGcGGcca-CGGg -3'
miRNA:   3'- -CCaGGUGUGGUGGCAGU-CCuacgGCC- -5'
5335 5' -56.9 NC_001798.1 + 117566 0.71 0.686801
Target:  5'- aGGUgCCGCggcgcgccggcauggACCACgGgCAGGAUGCCGu -3'
miRNA:   3'- -CCA-GGUG---------------UGGUGgCaGUCCUACGGCc -5'
5335 5' -56.9 NC_001798.1 + 122034 0.66 0.914393
Target:  5'- uGGUCCAC-CagGCCGUCAGcGGgggaGCCcuGGg -3'
miRNA:   3'- -CCAGGUGuGg-UGGCAGUC-CUa---CGG--CC- -5'
5335 5' -56.9 NC_001798.1 + 132123 0.7 0.722031
Target:  5'- aGGUCCugcaggcggccCugCGCCGcCGGGG-GCCGGc -3'
miRNA:   3'- -CCAGGu----------GugGUGGCaGUCCUaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 134788 0.69 0.769292
Target:  5'- cGGUCCACGCCGCCccc-GGA-GCCc- -3'
miRNA:   3'- -CCAGGUGUGGUGGcaguCCUaCGGcc -5'
5335 5' -56.9 NC_001798.1 + 135201 0.68 0.796317
Target:  5'- -cUCCugGCCGCCcUCgcgggccucgGGGAgGCCGGg -3'
miRNA:   3'- ccAGGugUGGUGGcAG----------UCCUaCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.