Results 81 - 87 of 87 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5335 | 5' | -56.9 | NC_001798.1 | + | 136587 | 0.66 | 0.908561 |
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Target: 5'- aGG-CCACACaguCCGUgCGGGGgacggGcCCGGg -3' miRNA: 3'- -CCaGGUGUGgu-GGCA-GUCCUa----C-GGCC- -5' |
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| 5335 | 5' | -56.9 | NC_001798.1 | + | 137800 | 0.67 | 0.876082 |
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Target: 5'- aGGUCCugGCCguaCG-CGGGGauguacuggUGCUGGa -3' miRNA: 3'- -CCAGGugUGGug-GCaGUCCU---------ACGGCC- -5' |
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| 5335 | 5' | -56.9 | NC_001798.1 | + | 143304 | 0.66 | 0.88301 |
|
Target: 5'- cGUCCGC-CC-CCGgCGGGucGCCGGc -3' miRNA: 3'- cCAGGUGuGGuGGCaGUCCuaCGGCC- -5' |
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| 5335 | 5' | -56.9 | NC_001798.1 | + | 145904 | 0.68 | 0.802448 |
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Target: 5'- --gCCGCGCCccACCGgCGGGAUcgcggcgagacgcaGCCGGg -3' miRNA: 3'- ccaGGUGUGG--UGGCaGUCCUA--------------CGGCC- -5' |
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| 5335 | 5' | -56.9 | NC_001798.1 | + | 148662 | 0.66 | 0.88301 |
|
Target: 5'- -cUCCugccCACCACCccCAGGGUcugGCCGGc -3' miRNA: 3'- ccAGGu---GUGGUGGcaGUCCUA---CGGCC- -5' |
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| 5335 | 5' | -56.9 | NC_001798.1 | + | 150355 | 0.72 | 0.603054 |
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Target: 5'- cGGUgCGCGuCCACCGgcacggCGGGcgGCgCGGg -3' miRNA: 3'- -CCAgGUGU-GGUGGCa-----GUCCuaCG-GCC- -5' |
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| 5335 | 5' | -56.9 | NC_001798.1 | + | 152255 | 0.68 | 0.829517 |
|
Target: 5'- gGGUCCGC-CCgggagcucguGCCGggcCGGGGUuccaugaGCCGGg -3' miRNA: 3'- -CCAGGUGuGG----------UGGCa--GUCCUA-------CGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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