miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5335 5' -56.9 NC_001798.1 + 69843 0.75 0.459146
Target:  5'- uGGUCCGgGCCGCCGUC-GGccGCCc- -3'
miRNA:   3'- -CCAGGUgUGGUGGCAGuCCuaCGGcc -5'
5335 5' -56.9 NC_001798.1 + 69575 0.71 0.643017
Target:  5'- cGGcCCACGCCAUCG--GGGcUGUCGGg -3'
miRNA:   3'- -CCaGGUGUGGUGGCagUCCuACGGCC- -5'
5335 5' -56.9 NC_001798.1 + 64004 0.7 0.702551
Target:  5'- cGGUCUccaGCCAgCGguUCAGGAUGCUGa -3'
miRNA:   3'- -CCAGGug-UGGUgGC--AGUCCUACGGCc -5'
5335 5' -56.9 NC_001798.1 + 60547 0.67 0.85407
Target:  5'- -cUCCAC-CCGCCGcaggUCAGGGUaCUGGu -3'
miRNA:   3'- ccAGGUGuGGUGGC----AGUCCUAcGGCC- -5'
5335 5' -56.9 NC_001798.1 + 60057 0.68 0.838428
Target:  5'- gGGUCCcC-CCGCCGacCuGGAgccGCCGGa -3'
miRNA:   3'- -CCAGGuGuGGUGGCa-GuCCUa--CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 58682 0.73 0.563416
Target:  5'- --aCCAcCGCCGCCGUCAGGGccgcggcgGCgCGGg -3'
miRNA:   3'- ccaGGU-GUGGUGGCAGUCCUa-------CG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 58308 0.67 0.861607
Target:  5'- gGGUCUgACACagcuCCGUCAGGcccGCCGc -3'
miRNA:   3'- -CCAGG-UGUGgu--GGCAGUCCua-CGGCc -5'
5335 5' -56.9 NC_001798.1 + 54385 0.71 0.662978
Target:  5'- gGGgggCCGCGgCGCgGUCggcGGGAgcUGCCGGg -3'
miRNA:   3'- -CCa--GGUGUgGUGgCAG---UCCU--ACGGCC- -5'
5335 5' -56.9 NC_001798.1 + 52021 0.66 0.908561
Target:  5'- gGGUCCcuGCugUACUGgccCGGGGUGCgCGc -3'
miRNA:   3'- -CCAGG--UGugGUGGCa--GUCCUACG-GCc -5'
5335 5' -56.9 NC_001798.1 + 48972 0.66 0.88301
Target:  5'- gGGUUU-CGCCACCGcccccCAGGccaGCCGGg -3'
miRNA:   3'- -CCAGGuGUGGUGGCa----GUCCua-CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 48150 0.66 0.88301
Target:  5'- -uUCUGCGCCGCgGUCGGGcgccUGgCGGc -3'
miRNA:   3'- ccAGGUGUGGUGgCAGUCCu---ACgGCC- -5'
5335 5' -56.9 NC_001798.1 + 43161 0.67 0.874671
Target:  5'- cGUcCCGCGCCGCCG-CGGcaaacgccugGCCGGu -3'
miRNA:   3'- cCA-GGUGUGGUGGCaGUCcua-------CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 42464 0.68 0.813641
Target:  5'- --cCCACGC-AUCGUCAGGGaGCCGu -3'
miRNA:   3'- ccaGGUGUGgUGGCAGUCCUaCGGCc -5'
5335 5' -56.9 NC_001798.1 + 42294 0.68 0.796317
Target:  5'- cGG-CCGCACgcggaGCCGUCGGG--GCCGa -3'
miRNA:   3'- -CCaGGUGUGg----UGGCAGUCCuaCGGCc -5'
5335 5' -56.9 NC_001798.1 + 41451 0.73 0.524505
Target:  5'- gGGUCCAUGCC-CCGcCGGGGggggcgGUCGGc -3'
miRNA:   3'- -CCAGGUGUGGuGGCaGUCCUa-----CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 39846 0.67 0.846342
Target:  5'- --gCCGCGCUGCCGggcgaggCgucgaggcuucgGGGGUGCCGGc -3'
miRNA:   3'- ccaGGUGUGGUGGCa------G------------UCCUACGGCC- -5'
5335 5' -56.9 NC_001798.1 + 39571 0.69 0.750678
Target:  5'- cGUCCGCGCCGaCG-CGGGGUGgCGa -3'
miRNA:   3'- cCAGGUGUGGUgGCaGUCCUACgGCc -5'
5335 5' -56.9 NC_001798.1 + 39537 0.69 0.741217
Target:  5'- --gCCGCGCCucGCCGUgGGuGgcGCCGGg -3'
miRNA:   3'- ccaGGUGUGG--UGGCAgUC-CuaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 37390 0.7 0.702551
Target:  5'- uGUCCGaccgaGCCACCGggCGGGuccgugggGCCGGc -3'
miRNA:   3'- cCAGGUg----UGGUGGCa-GUCCua------CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 37163 0.66 0.908561
Target:  5'- --gCCGCGCCGCCuggCGGGccGCuCGGc -3'
miRNA:   3'- ccaGGUGUGGUGGca-GUCCuaCG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.