Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5335 | 5' | -56.9 | NC_001798.1 | + | 136587 | 0.66 | 0.908561 |
Target: 5'- aGG-CCACACaguCCGUgCGGGGgacggGcCCGGg -3' miRNA: 3'- -CCaGGUGUGgu-GGCA-GUCCUa----C-GGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 99318 | 0.66 | 0.913245 |
Target: 5'- cGGUCaACugCAUCGUCgAGGAgguggacgcgcgGUCGGu -3' miRNA: 3'- -CCAGgUGugGUGGCAG-UCCUa-----------CGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 122034 | 0.66 | 0.914393 |
Target: 5'- uGGUCCAC-CagGCCGUCAGcGGgggaGCCcuGGg -3' miRNA: 3'- -CCAGGUGuGg-UGGCAGUC-CUa---CGG--CC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 1741 | 0.66 | 0.914393 |
Target: 5'- aGGUcCCGCGCCGCCGgcCAGc--GCaCGGc -3' miRNA: 3'- -CCA-GGUGUGGUGGCa-GUCcuaCG-GCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 1996 | 0.66 | 0.914393 |
Target: 5'- cGGUCCAgUugC-CCGccCAGGcgGCCGu -3' miRNA: 3'- -CCAGGU-GugGuGGCa-GUCCuaCGGCc -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 3813 | 0.66 | 0.900019 |
Target: 5'- gGGcCCGCGCCuccuCCGccUCGGGcgccccccagagGCCGGg -3' miRNA: 3'- -CCaGGUGUGGu---GGC--AGUCCua----------CGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 88139 | 0.66 | 0.896225 |
Target: 5'- gGGUCUGgGCCACgaucaCGUaCGGGAU-CCGGu -3' miRNA: 3'- -CCAGGUgUGGUG-----GCA-GUCCUAcGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 106728 | 0.67 | 0.876082 |
Target: 5'- cGUCCuaGCCAUCGcCAGGggGCCu- -3' miRNA: 3'- cCAGGugUGGUGGCaGUCCuaCGGcc -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 13666 | 0.66 | 0.882326 |
Target: 5'- --aCCGCgacaacuagcaggGCCGCCGUCccGAcGCCGGa -3' miRNA: 3'- ccaGGUG-------------UGGUGGCAGucCUaCGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 48150 | 0.66 | 0.88301 |
Target: 5'- -uUCUGCGCCGCgGUCGGGcgccUGgCGGc -3' miRNA: 3'- ccAGGUGUGGUGgCAGUCCu---ACgGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 148662 | 0.66 | 0.88301 |
Target: 5'- -cUCCugccCACCACCccCAGGGUcugGCCGGc -3' miRNA: 3'- ccAGGu---GUGGUGGcaGUCCUA---CGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 4207 | 0.66 | 0.88301 |
Target: 5'- uGGUCUGCGgCGCUGgCGGGG-GCgCGGg -3' miRNA: 3'- -CCAGGUGUgGUGGCaGUCCUaCG-GCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 48972 | 0.66 | 0.88301 |
Target: 5'- gGGUUU-CGCCACCGcccccCAGGccaGCCGGg -3' miRNA: 3'- -CCAGGuGUGGUGGCa----GUCCua-CGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 143304 | 0.66 | 0.88301 |
Target: 5'- cGUCCGC-CC-CCGgCGGGucGCCGGc -3' miRNA: 3'- cCAGGUGuGGuGGCaGUCCuaCGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 4072 | 0.66 | 0.88301 |
Target: 5'- cGGcCCGCgguCGCCG-CGGGGguccggGCCGGg -3' miRNA: 3'- -CCaGGUGug-GUGGCaGUCCUa-----CGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 29386 | 0.66 | 0.88301 |
Target: 5'- cGGgcaCCACucaggGCCgcGCCGgCGGGgcGCCGGg -3' miRNA: 3'- -CCa--GGUG-----UGG--UGGCaGUCCuaCGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 85654 | 0.66 | 0.889725 |
Target: 5'- -cUCCACugCugcuuccggACCGacggCGGGGUGcCCGGg -3' miRNA: 3'- ccAGGUGugG---------UGGCa---GUCCUAC-GGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 105719 | 0.66 | 0.889725 |
Target: 5'- cGGUCgACACCcaggggcuGuuGUCGGGugggugucGCCGGc -3' miRNA: 3'- -CCAGgUGUGG--------UggCAGUCCua------CGGCC- -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 105450 | 0.66 | 0.889725 |
Target: 5'- cGcCCGCuccGCCGCCGUCucccggGGGAUGuuGa -3' miRNA: 3'- cCaGGUG---UGGUGGCAG------UCCUACggCc -5' |
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5335 | 5' | -56.9 | NC_001798.1 | + | 30862 | 0.66 | 0.895585 |
Target: 5'- cGGUCCGCGCC-CUGUCGcccacccccccguGGcccgGCaCGGa -3' miRNA: 3'- -CCAGGUGUGGuGGCAGU-------------CCua--CG-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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