miRNA display CGI

Results 81 - 87 of 87 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
5335	5'	-56.9	NC_001798.1	+	148662	0.66	0.88301
	Target:  5'- -cUCCugccCACCACCccCAGGGUcugGCCGGc -3' miRNA:   3'- ccAGGu---GUGGUGGcaGUCCUA---CGGCC- -5'
5335	5'	-56.9	NC_001798.1	+	48150	0.66	0.88301
	Target:  5'- -uUCUGCGCCGCgGUCGGGcgccUGgCGGc -3' miRNA:   3'- ccAGGUGUGGUGgCAGUCCu---ACgGCC- -5'
5335	5'	-56.9	NC_001798.1	+	13666	0.66	0.882326
	Target:  5'- --aCCGCgacaacuagcaggGCCGCCGUCccGAcGCCGGa -3' miRNA:   3'- ccaGGUG-------------UGGUGGCAGucCUaCGGCC- -5'
5335	5'	-56.9	NC_001798.1	+	106728	0.67	0.876082
	Target:  5'- cGUCCuaGCCAUCGcCAGGggGCCu- -3' miRNA:   3'- cCAGGugUGGUGGCaGUCCuaCGGcc -5'
5335	5'	-56.9	NC_001798.1	+	31671	0.67	0.876082
	Target:  5'- gGGcCCGCGCCGCC--CGccGUGCCGGu -3' miRNA:   3'- -CCaGGUGUGGUGGcaGUccUACGGCC- -5'
5335	5'	-56.9	NC_001798.1	+	137800	0.67	0.876082
	Target:  5'- aGGUCCugGCCguaCG-CGGGGauguacuggUGCUGGa -3' miRNA:   3'- -CCAGGugUGGug-GCaGUCCU---------ACGGCC- -5'
5335	5'	-56.9	NC_001798.1	+	39846	0.67	0.846342
	Target:  5'- --gCCGCGCUGCCGggcgaggCgucgaggcuucgGGGGUGCCGGc -3' miRNA:   3'- ccaGGUGUGGUGGCa------G------------UCCUACGGCC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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